Gurdon Institute Xenopus laevis EST Database
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Application in use by Guest User - 08 Mar 2021 - database INFO-PUBLIC
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By Clone or Sequence Name
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Related Clusters
CS% VC Transcript Size Type Links % In % Out Identified Blast Description.
1 1.0 0Xl3.1-IMAGE:3377728-IMAGp.5 24 END 1 7 4 (no blast hit)
2 2.0 0Xl3.1-XL492d21ex.3 8 END 6 42 75 (no blast hit)
CS% VC Transcript Size Type Percent From To Identified Blast Description.
3 0.0 0Xl3.1-XL040h22.5 5 PI 92 16 647 hypothetical protein LOC779149 [Xenopus laevis]
This cluster: approximate FL confidence score = 90%
1012771712 Xl3.1-PBX0097F11.5 - 14 ESTs
..-160......-150......-140......-130......-120......-110......-100......-90.......-80.......-70.......-60.......-50.......-40.......-30.......-20.......-10.......0.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760.......770.......780.......790.......800.......810.......820.......830.......840.......850
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Xl3.1-PBX0097F11.5 TATCCCCTGCTGCTGCTGCTGCTCCTGACACCTCCTTCTCCCTCCCGGGCTCCAGCTGATCCGGTGCCCCTGCTGCCTTTGCTTATCCGAGCGAGGCTTCTGTGCAAGATGGCGGGATCTTTGGTTGAAAGCGAAGCACTGCAGATGGGCGTTAGACGTTTGAGCAGTCCCTTAACGTCACCTGTACAGGCTGAGGTTTATTTTCCACGGCTGACAGTTCCATTCTGTGGTCATATAAAAGGAGGCCTGAGACCGGGAAAGAAAATCCTTATCATGGGAATTGTTAACCTGGAGCCAAAGAATTTTGACATCAGGTTGACATGTGGGGATTCAGAAGATCCAGCAGCCGATATTGCCATTGAGCTGAGGGCAGAGTTTTCTGACAAACAGTTTTTAAGGAATGCACGTGTATCCGGAAAGTGGGGAGAAGAAGAGTCGTCAATAGCTTATTTCCCCTTCATAGCAGATCAGCCTTTCAGAGTAGAGATACACTGTGAGCACCCTCGGTTCAGGATATTTGTGGATGGACATCAGCTGTTTGACTTTTATCATCGCGTCGAGAGCCTTTCAGCCATTAACACGATTAAAATCAACGGCGACCTACAACTTACCAAACTTGGTTGACGACTGCCGATGTTCCCACTCCAC
Xl3.1-CHK-1012692548 CTGCTGCTGCTGCTGCTCCTGACACCTCCTTCTCCCTCCCGGGCTCCAGCTGATCCGGTGCCCCTGCTGCCTTTGCTTATCCGAGCGAGGCTTCTGTGCAAGATGGCGGGATCTTTGGTTGAAAGCGAAGCACTGCAGATGGGCGTTAGACGTTTGAGCAGTCCCTTAACGTCACCTGTACAGGCTGAGGTTTATTTTCCACGGCTGACAGTTCCATTCTGTGGTCATATAAAAGGAGGCCTGAGACCGGGAAAGAAAATCCTTATCATGGGAATTGTTAACCTGGAGCCAAAGAATTTTGACATCAGGTTGACATGTGGGGATTCAGAAGATCCAGCAGCCGATATTGCCATTGAGCTGAGGGCAGAGTTTTCTGACAAACAGTTTTTAAGGAATGCACGTGTATCCGGAAAGTGGGGAGAAGAAGAGTCGTCAATAGCTTATTTCCCCTTCATAGCAGATCAGCCTTTCAGAGTAGAGATACACTGTGAGCACCCTCGGTTCAGGATATTTGTGGATGGACATCAGCTGTTTGACTTTTATCATCGCGTCGAGAGCCTTTCAGCCATTAACACGATTAAAATCAACGGCGACCTACAACTTACCAAACTTGGTTGACGACTGCCGATGTTCCCACTCCACCGGTGG
consensus depths 3 6 8 9 9 11 10 11 10 12 10 12 12 13 12 13 12 13 12 13 12 13 12 13 13 13 13 13 13 13 13 13 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 12 14 13 14 13 14 13 14 11 13 12 13 11 12 11 12 10 11 8 9 9 9 9 9 9 9 9 9 7 8 7 8 6 7 6 7 6 7 5 6 3 4
BLH ATG 108 418
BLH MIN 108 69
BLH OVR 108 98
EST CLI -9 45
ORF LNG 108 2
5 1 2 bld Tbd7 5g3 out XL051b12.5p GCTACACTAGCAGCCCCGAGCTTGTCTCCTGTCTCCACTACAGAAACAAATCGCAACTCCTCCTCCATCGTCACCTCCCCCTCTCCCCGGCTGCTGGGAAGGTTTAGCAGTGGCAGGTCAGCCCCGGATTCCTTCTGTTCCCTGCGCTGGACTCAGACCTCCTATCCCctgctgctgctgctgctCCTGACACCTCCTTCTCCCTCCCGGGCTCCAGCTGATCCGGTGCCCCTGCTGCCTTTGCTTATCCGAGCGAGGCTTCTGTGCAAGATGGCGGGATCTTTGGTTGAAAGCGAAGCACTGCAGATGGGCGTTAGACGTTTGAGCAGTCCCTTAACGTCACCTGTACAGGCTGAGGTTTATTTCCCACGGCTGACAGTTCCATTCTGTGGTCATATAAAAGGAGGCCTGAGACCGGGAAAGAAAATCCTTATCATGGGAATTGTTAACCTGGAGCCAAAGAATTTTGACATCAGGTTGACATGTGGGGATTCAGAAGATCCAGCAGCCGATATTGCCATTGAGCTGAGGGCAGAGTTTTCTGACAAACAGTTTTTAAGGAACGCACGTGTATCCGGAAAGTGGGGAGAAGAAGAGTCGTCAATAGCTTATTTCCCCTTCATAGCAGATCAG
5 1 2 chi Neu7 in XL012b16.5p GTTCTACAAAGNAAGAAGTCTGCTGGAGCAGCACTATTAACTGATGCCTTTTGAAAAAAAGATGTTTTCTGATGACATGATTAGCAAATTGCACTCACACACCCTGGCCTTGGATAGAAGATAGTCCCTGGTGCACAGCAATGGTAGAATCGGCGTCCCACCTTGAAATGACGAATCAAAAGGAAATTCACTGGCACACAGCAGATGGGCGTTAGACGTTTGAGCAGTCCCTTAACGTCACCTGTACAGGCTGAGGTTTATTTTCCACGGCTGACAGTTCCATTCTGTGGTCATATAAAAGGAGGCCTGAGACCGGGAAAGAAAATCCTTATCATGGGAATTGTTAACCTGGAGCCAAAGAATTTTGACATCAGGTTGACATGTGGGGATTCAGAAGATCCAGCAGCCGATATTGCCATTGAGCTGAGGGCAGAGTTTTCTGACAAACAGTTTTTAAGGAATGCACGTGTATCCGGAAAGTGGGGAGAAGAAGAGTCGTCAATAGCTTATTTCCCCTTCATAGCAGATCAGCCTTTCAGAGTAGAGATACACTGTGAGCACCCCTCGGTTCAGGA
5 1 2 seed Egg1 5x3 PBX0097F11.5p CAGACCTCCTATCCCctgctgctgctgctgctCCTGACACCTCCTTCTCCCTCCCGGGCTCCAGCTGATCCGGTGCCCCTGCTGCCTTTGCTTATCCGAGCGAGGCTTCTGTGCAAGATGGCGGGATCTTTGGTTGAAAGCGAAGCACTGCAGATGGGCGTTAGACGTTTGAGCAGTCCCTTAACGTCACCTGTACAGGCTGAGGTTTATTTTCCACGGCTGACAGTTCCATTCTGTGGTCATATAAAAGGAGGCCTGAGACCGGGAAAGAAAATCCTTATCATGGGAATTGTTAACCTGGAGCCAAAGAATTTTGACATCAGGTTGACATGTGGGGATTCAGAAGATCCAGCAGCCGATATTGCCATTGAGCTGAGGGCAGAGTTTTCTGACAAACAGTTTTTAAGGAATGCACGTGTATCCGGAAAGTGGGGAGAAGAAGAGTCGTCAATAGCTTATTTCCCCTTCATAGCAGATCAGCCTTTCAGAGTAGAGATACACTGTGAGCACCCTCGGTTCAGGATATTTGTGGATGGACATCAGCTGTTTGACTTTTATCATCGCGTCGAGAGCCTTTCAGCCATTAACACGATTAAAATCAACGGCGACCTACAACTTACCAAACTTGGTTGACGACTGCCGATGTTCCCACTCCACCGGTGGACT
5 1 2 bld Emb4 5g IMAGE:4680668.5p CAGAcctcctatcccctgctgctgctgctgctcctgacacctccttctccctcccgggctccAGCTGATCCGGTGCCCCTGCTGCCTTTGCTTATCCGAGCGAGGCTTCTGTGCAAGATGGCGGGATCTTTGGTTGAAAGCGAAGCACTGCAGATGGGCGTTAGACGTTTGAGCAGTCCCTTAACGTCACCTGTACAGGCTGAGGTTTATTTTCCACGGCTGACAGTTCCATTCTGTGGTCATATAAAAGGAGGCCTGAGACCGGGAAAGAAAATCCTTATCATGGGAATTGTTAACCTGGAGCCAAAGAATTTTGACATCAGGTTGACATGTGGGGATTCAGAAGATCCAGCAGCCGATATTGCCATTGAGCTGAGGGCAGAGTTTTCTGACAAACAGTTTTTAAGGAATGCACGTGTATCCGGAAAGTGGGGAGAAAGAGAGTCGTCAATAGCT
5 1 2 bld Neu7 5g3 out XL015c20.5p GCTCAGACCTCCCATCCCCTGCTGCTGCTCCTGACACCTCCTTCTCCCTCCCGGGCTCCAGCTGATCCGGTGCCCCTGCTGCCTTTGCTTATCCGAGCGAGGCTTCTGTGCAAGATGGCGGGATCTTTGGTTGAAAGCGAAGCACTGCAGATGGGCGTTAGACGTTTGAGCAGTCCCTTAACGTCACCTGTACAGGCTGAGGTTTATTTTCCACGGCTGACAGTTCCATTCTGTGGTCATATAAAAGGAGGCCTGAGACCGGGAAAGAAAATCCTTATCATGGGAATTGTTAACCTGGAGCCAAAGAATTTTGACATCAGGTTGACATGTGGGGATTCAGAAGATCCAGCAGCCGATATTGCCATTGAGCTGAGGGCAGAGTTTTCTGACAAACAGTTTTTAAGGAATGCACGTGTATCCGGAAAGTGGGGAGAAGAAGAGTCGTCAATAGCTTATTTCCCCTTCATAGCAGATCAGCCTTTCAGAGTAGAGATACACTGTGAGCACCCTCGGTTCAGGATATTTGTGGATGGACATCAGCTGTTTGACTTTTATCATCGCGTCGAGAGCCTTTCAGCCATTAACACGATTAAAATCAACGGCGACCTACAACTTACCAAACTTGGTTGACGACTGC
5 1 2 bld Ga12 5x3 XL143m04.5p GCTCAGACCTCCCATCCCCTGCTGCTGCTCCTGACACCTTCTTCTCCCTCCCGGGCTCCAGCTGATCCGGTGCCCCTGCTGCCTTTGCTTATCCGAGCGAGGCTTCTGTGCAAGATGGCGGGATCTTTGGTTGAAAGCGAAGCACTGCAGATGGGCGTTAGACGTTTGAGCAGTCCCTTAACGTCACCTGTACAGGCTGAGGTTTATTTTCCACGGCTGACAGTTCCATTCTGTGGTCATATAAAAGGAGGCCTGAGACCGGGAAAGAAAATCCTTATCATGGGAATTGTTAACCTGGAGCCAAAGAATTTTGACATCAGGTTGACATGTGGGGATTCAGAAGATCCAGCAGCCGATATTGCCATTGAGCTGAGGGCAGAGTTTTCTGACAAACAGTTTTTAAGGAATGCACGTGTATCCGGAAAGTGGGGAGAAGAAGAGTCGTCAATAGCTTATTTCCCCTTCATAGCAGATCAGCCTTTCAGAGTAGAGATACACTGTGAGCACCCTCGGTTCAGGATATTTGTGGATGGACATCAGCTGTTTGACTTTTATCATCGCGTCGAGAGCCTTTCAGCCATTAACACGATTAAAATCAACGGCGACCTACAACTTACCAAACTTGGTTGACGACTGCCGATGTTCC
5 1 2 bld Em10 5g3 out IMAGE:7982971.5p ctgctgctgctgctgctgctCCTGACACCTCCTTCTCCCTCCCGGGCTCCAGCTGATCCGGTGCCTCTGCTGCCTTTGCTTATCCGAGCGAGGCTTCTGTGCAAGATGGCGGGATCTTTGGTTGAAAGCGAAGCACTGCAGATGGGCGTTAGACGTTTGAGCAGTCCCTTAACGTCACCTGTACAGGCTGAGGTTTATTTTCCACGGCTGACAGTTCCATTCTGTGGTCATATAAAAGGAGGCCTGAGACCGGGAAAGAAAATCCTTATCATGGGAATTGTTAACCTGGAGCCAAAGAATTTTGACATCAGGTTGACATGTGGGGATTCAGAAGATCCAGCAGCCGATATTGCCATTGAGCTGAGGGCAGAGTTTTCTGACAAACAGTTTTTAAGGAATGCACGTGTATCCGGAAAGTGGGGAGAAGAAGAGTCGTCAATAGCTTATTTCCCCTTCATAGCAGATCAGCCTTTCAGAGTAGAGATACACTGTGAGCACCCTCGGTTCAGGATATTTGTGGATGGACATCAGCTGTTTGACTTTTATCATCGCGTCGAGAGCCTTTTCAGCCATTAACACGATTAAAATCAACGGCGACCTACAACTTACCAAACTTGGTTGACGACTGCCGATGTTCCCACTCCACCGGTGGACTATTTGCAAACACGCAGG
5 1 2 bld Neu7 5g3 out XL044a15.5p CCCTGCTGCTGCTCCTGACACCTCCTTCTCCCTCCCGGGCTCCAGCTGATCCGGTGCCCCTGCTGCCTTTGCTTATCCGAGCGAGGCTTCTGTGCAAGATGGCGGGATCTTTGGTTGAAAGCGAAGCACTGCAGATGGGCGTTAGACGTTTGAGCAGTCCCTTAACGTCACCTGTACAGGCTGAGGTTTATTTTCCACGGCTGACAGTTCCATTCTGTGGTCATATAAAAGGAGGCCTGAGACCGGGAAAGAAAATCCTTATCATGGGAATTGTTAACCTGGAGCCAAAGAATTTTGACATCAGGTTGACATGTGGGGATTCAGAAGATCCAGCAGCCGATATTGCCATTGAGCTGAGGGCAGAGTTTTCTGACAAACAGTTTTTAAGGAATGCACGTGTATCCGGGAAAGTGGGGAGAAGAAGAGTCGTCAATAGCTTATTTCCCCTTCATAGCAGATCAGCCTTTCAGAGTAGAGATACACTGTGAGCACCCTCGGTTCA
5 1 2 bld Neu7 5g3 out XL021b18.5p CCCTGCTGCTGCTCCTGACACCTCCTTCTCCCTCCCGGGCTCCAGCTGATCCGGTGCCCCTGCTGCCTTTGCTTATCCGAGCGAGGCTTCTGTGCAAGATGGCGGGATCTTTGGTTGAAAGCGAAGCACTGCAGATGGGCGTTAGACGTTTGAGCAGTCCCTTAACGTCACCTGTACAGGCTGAGGTTTATTTTCCACGGCTGACAGTTCCATTCTGTGGTCATATAAAAGGAGGCCTGAGACCGGGAAAGAAAATCCTTATCATGGGAATTGTTAACCTGGAGCCAAAGAATTTTGACATCAGGTTGACATGTGGGGATTCAGAAGATCCAGCAGCCGATATTGCCATTGAGCTGAGGGCAGAGTTTTCTGACAAACAGTTTTTAAGGAATGCACGTGTATCCGGAAAGTGGGGAGAAGAAGAGTCGTCAATAGCTTATTTCCCCTTCATAGCAGATCAGCCTTTCAGAGTAGAGATACACTGTGAGCACCCTCGGTTCAGGATATTTGTGGATGGACATCAGCTGTTTGACTTTTATCATCGCGTCGAGAGCCTTTCAGCCATTAACACGATTAAAATCAACGGCGACCTACAACTTACCAAACTTGGTTGACGACTGCCGATGTTCC
5 1 2 bld Emb4 5g IMAGE:4679891.5p TGGCTGCTCCTGACACCTCCTTCTCCCTCCCGGGCTCCAGCTGATCCGGTGCCCCTGCTGCCTTTGCTTATCCGAGCGAGGCTTCTGTGCAAGATGGCGGGATCTTTGGTTGAAAGCGAAGCACTGCAGATGGGCGTTAGACGTTTGAGCAGTCCCTTAACGTCACCTGTACAGGCTGAGGTTTATTTTCCACGGCTGACAGTTCCATTCTGTGGTCATATAAAAGGAGGCCTGAGACCGGGAAAGAAAATCCTTATCATGGGAATTGTTAACCTGGAGCCAAAGAATTTTGACATCAGGTTGACATGTGGGGATTCAGAAGATCCAGCAGCCGATATTGCCATTGAGCTGAGGGCAGAGTTTTCTGACAAACAGTTTTTAAGGAATGCACGTGTATCCGGAAAGTGGGGAGAAGAAGAGTCGTCAATAGCTTATTTCCCCTTCATAGCAGATCAGCCTTTCAGAGTAGAGATACACTGTGAGCACCCTCGGGTCAGGATATTTGTGGATGGACATCAGCTGTTTGACTTTTATCATCGCGTCGAGAGCCTTTCAGCCATTAACACGATTAAAATCAACGGC
5 1 2 bld DMZ 5x3 out xl292o06.5p GCTGCCGACACCTCCTTCTCCCTCCCGGGCTCCAGCTGATCCGGTGCCCCCGCAGCCTTTGCTTCTCCGTGTGAGGCTTCTGTACAAGATGGCGGGATCCCTGGTTGAAAGTGAAGCGCTGCAGATGGGCGTTAGACGTTTGAGCAGTCCCTTGACATCACCTGTACAAGCGGAGGTTTATTTCCCACGGCTGACTGTTCCATTCTGTGGTCATATAAAAGGAGGCCTGAGACCAGGAAAGAAAATCCTTATTATGGGAATTGTTAACCTGGAGCCAAAGAGTTTTGACATCAGGTTGACATGCGGAGACTCGGAAGATCCAGCAGCTGATATTGCCATTGAGCTGAGAGCAGAGTTTGCTGACAAACAGTTCCTAAGGAATGCGTGTGTATCCGGAAAGTGGGGAGAAGAAGAGTCCGCAATACCTTATTTCCCATTCATAGCAGATCAGCCTTTCAGAGTAGAGATACACTGTGAGCACCCTCAATTCAGGATAATTGTGGACGGACATCAGCTCTTTGACTTTTATCATCGCGTCGAGAGCCTTTCAGCCATTAATACAATTAAAATCAATGGTGACCTACAACTGACCAAACTTGGTTGACGATTGACTATGTTCCCACCCCAGCGGTGGACGAGTACAAGCAACGCAAGGTCACAAGCAGCGCAGTTCATTGTGTCC
5 1 2 bld Tbd7 5g3 out XL081d23.5p CTCCCGGGCTCCAGAATGATCCGGTGCCCCTGCTGCCTTTGCTTATCCGAGCGAGGCTTCTGTGCAAGATGGCGGGATCTTTGGTTGAAAGCGAAGCACTGCAGATGGGCGTTAGACGTTTGAGCAGTCCCTTAACGTCACCTGTACAGGCTGAGGTTTATTTTCCACGGCTGACAGTTCCATTCTGTGGTNATATAAAAGGAGGCCTGAGACCGGGAAAGAAAATCCTTATCATGGGAATTGTTAACCTGGAGCCAAAGAATTTTGACATCAGGTTGACATGTGGGGATTCAGAAGATCCAGCAGCCGATATTGCCATTGAGCTGAGGGCAGAGTTTTCTGACAAACAGTTTTTAAGGAATGCACGTGTATCCGGAAAGTGGGGAGAAGAAGAGTCGTCAATAGCTTATTTCCCCTTCATAGCAGATCAGCCTTTCAGAGTAGAGATACACTGTGAGCACCCTCGGTTCAGGATATTTGTGGATGGACATCAGCTGTTTGACTTTTATCATCGCGTCGAGAGCCTTTCAGCCA
5 1 2 bld Emb4 5g IMAGE:4679891-IMAGp.IMAGp GCCCCTGCTGCCTTTGCTTATCCGAGCGAGGCTTCTGTGCAAGATGGCGGGATCTTTGGTTGAAAGCGAAGCACTGCAGATGGGCGTTAGACGTTTGAGCAGTCCCTTAACGTCACCTGTACAGGCTGAGGTTTATTTTCCACGGCTGACAGTTCCATTCTGTGGTCATATAAAAGGAGGCCTGAGACCGGGAAAGAAAATCCTTATCATGGGAATTGTTAACCTGGAGCCAAAGAATTTTGACATCAGGTTGACATGTGGGGATTCAGAAGATCCAGCAGCCGATATTGCCATTGAGCTGAGGGCAGAGTTTTCTGACAAACAGTTTTTACGGAATGCACGTGTATCCGGACAGTGGGGAGAAGAAGAGTCGTCAATAGCCTATTTCCCCTTCATAGCAGATCAGCCTTTCAGAGTAGAGATACACTGTGAGCACCC
3 1 2 bld Neu7 in XL012b16.3p TGTACAGGCTGAGGTTTATTTTCCACGGCTGACAGTTCCATTCTGTGGTCATATAAAAGGAGGCCTGAGACCGGGAAAGAAAATCCTTATCATGGGAATTGTTAACCTGGAGCCAAAGAATTTTGACATCAGGTTGACATGTGGGGATTCAGAAGATCCAGCAGCCGATATTGCCATTGAGCTGAGGGCAGAGTTTTCTGACAAACAGTTTTTAAGGAATGCACGTGTATCCGGAAAGTGGGGAGAAGAAGAGTCGTCAATAGCTTATTTCCCCTTCATAGCAGATCAGCCTTTCAGAGTAGAGATACACTGTGAGCACCCTCGGTTCAGGATATTTGTGGATGGACATCAGCTGTTTGACTTTTATCATCGCGTCGAGAGCCTTTCAGCCATTAACACGATTAAAATCAACGGCGACCTACAACTTACCAAACTTGGTTGACGACTGCCGATGTTCCCACTCCACCGGTGGACTAGTTGCAAACACGCAAGGTTGCCAAGCAGCGCAGTTCATTGTGCCAGAAACACCAGGCCCAGGGACAATAGTTACAGAGAGCCAGTTTTGTTTCATTGTTTTAATGGACCGTGCGGTACTTATACAGGGGCTGCCATGTATATTACCTACACTTAACCTTTTTTTGGCCGGACTACAATAAACGGAAACAGCAAG
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