Gurdon Institute Xenopus laevis EST Database
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Application in use by Guest User - 06 Mar 2021 - database INFO-PUBLIC
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By Clone or Sequence Name
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Related Clusters
CS% VC Transcript Size Type Links % In % Out Identified Blast Description.
1 2.0 0Xl3.1-IMAGE:8638510.5 4 END 1 33 25 (no blast hit)
CS% VC Transcript Size Type Percent From To Identified Blast Description.
2 0.0 0Xl3.1-IMAGE:6950434.3 48 PI 92 2 981 (no blast hit)
3 0.0 0Xl3.1-IMAGE:8638510.5 4 PI 92 265 1017 (no blast hit)
This cluster: approximate FL confidence score = 0%
1012780238 Xl3.1-IMAGE:8531571.5 - 3 ESTs
0.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760.......770.......780.......790.......800.......810.......820.......830.......840.......850.......860.......870.......880.......890.......900.......910.......920.......930.......940.......950.......960.......970.......980.......990.......1000......1010......1020......1030......1040......1050......1060......1070......1080......1090.
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Xl3.1-IMAGE:8531571.5 ATTTGGAAGAGGAGCTGGTGGCTTTGAAGGCATCCTGGCCACCAATGAAAAGCATACCATGCAAAACCTTAATGACCGCTTAGCCAGTTACTTGGATAAAGTTAAGGCTTTGGAAAAGGATAATACTGATCTTGAGACGAAAATACGAGAATGGTATGAAAAACTTCGTCCAGCATCTGGTGGTGTAGGAACAGCGGACTACAGTAAATACTACCCAATTATTGAAGAACTCAAGAAAAAGATCATGGACAGCACTTTGGAAAATGCCAGGATCCTCTTACAGACTGACAATGCCCGGCTGGCGGCTGATGACTTCAGGCTGAAGTATGAGAACGAGCTGGCCCTTCGCCAGAGCGTGGAAGCTGATATTAATGGCCTACGTAGAGTGCTCGATGAGTTGACCCTGTGCAAGGCTGATCTGGAATTGCAGATTGAAAGCTTGACAGAGGAACTGGCGTATCTGAAGAAAAATCATAAGGAGGAATTGGATGCTCTCCAAGGTGGACCTGCTGGCCAGCTCACTGTTGAGATGAATGCTGCTCCAGGAACCGACCTGACCAAGTTACTCAATGACATGAGAGAACAATATGAAACCCTTGCTGAGAAGAACAGAAGAGAAGCTGAGAGAGCATTTAATGAGCAGAGCAAAGAAATAAAGAAAGAGATCCAAGCTGGAGTGCAGCAAGTACAGTCTAACACTACAGAGATTTCAGATCTGAAACGGACACTTCAGGGATTGGAGATAGAACTTAATGCACAGATGGCAATGAAACAATCGTTAGAGAAAACCCTGGCAGAGACAGAAGGACGCTTTTGTTCTCAGCTTGGGCAGTTACAAAACTTAATCACCAGTGTGGAGGAGCAGTTGGTCCAACTGAGAAGTGACATGGAGCTTCAGAGCAATGAGTACAAACAGCTGCTGGACACTCAGACCCGGTTAGAGACAGAGATAGAGACATATCGCAAATTGCTGGAAGGAGAAGGGGAGCAGAGCTCGCTGGATGTCGATGCTCTTTCGAACCTAAACTATTTCTACAGACAAACGCTTAACTTATATTGAAAGTGTGATGGAAGTGATTCAAGTGCAGAAGT
Xl3.1-CHK-1012714326 AAGAGGAGCTGGTGGCTTTGAAGGCATCCTGGCCACCAATGAAAAGCATACCATGCAAAACCTTAATGACCGCTTAGCCAGTTACTTGGATAAAGTTAAGGCTTTGGAAAAGGATAATACTGATCTTGAGACGAAAATACGAGAATGGTATGAAAAACTTCGTCCAGCATCTGGTGGTGTAGGAACAGCGGACTACAGTAAATACTACCCAATTATTGAAGAACTCAAGAAAAAGATCATGGACAGCACTTTGGAAAATGCCAGGATCCTCTTACAGACTGACAATGCCCGGCTGGCGGCTGATGACTTCAGGCTGAAGTATGAGAACGAGCTGGCCCTTCGCCAGAGCGTGGAAGCTGATATTAATGGCCTACGTAGAGTGCTCGATGAGTTGACCCTGTGCAAGGCTGATCTGGAATTGCAGATTGAAAGCTTGACAGAGGAACTGGCGTATCTGAAGAAAAATCATAAGGAGGAATTGGATGCTCTCCAAGGTGGACCTGCTGGCCAGCTCACTGTTGAGATGAATGCTGCTCCAGGAACCGACCTGACCAAGTTACTCAATGACATGAGAGAACAATATGAAACCCTTGCTGAGAAGAACAGAAGAGAAGCTGAGAGAGCATTTAATGAGCAGAGCAAAGAAATAAAGAAAGAGATCCAAGCTGGAGTGCAGCAAGTACAGTCTAACACTACAGAGATTTCAGATCTGAAACGGACACTTCAGGGATTGGAGATAGAACTTAATGCACAGATGGCAATGAAACAATCGTTAGAGAAAACCCTGGCAGAGACAGAAGGACGCTTTTGTTCTCAGCTTGGGCAGTTACAAAACTTAATCACCAGTGTGGAGGAGCAGTTGGTCCAACTGAGAAGTGACATGGAGCTTCAGAGCAATGAGTACAAACAGCTGCTGGACACTCAGACCCGGTTAGAGACAGAGATAGAGACATATCGCAAATTGCTGGAAGGxxxxxxGGAGCAxxGCTCGCTGGATGTCGATGCTCTxxxxAACCTAAACxAxxTCTACAGACAAACGCTTAACTTATATTGAAAGTGTGATGGAAGTGATTCAAGTGC
consensus depths 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 1 1 1 1 1 1 1
BLH MIN 16 128
5 1 2 seed Lmb1 out IMAGE:8531571.5p ATTTGGAAGAGGAGCTGGTGGCTTTGAAGGCATCCTGGCCACCAATGAAAAGCATACCATGCAAAACCTTAATGACCGCTTAGCCAGTTACTTGGATAAAGTTAAGGCTTTGGAAAAGGATAATACTGATCTTGAGACGAAAATACGAGAATGGTATGAAAAACTTCGTCCAGCATCTGGTGGTGTAGGAACAGCGGACTACAGTAAATACTACCCAATTATTGAAGAACTCAAGAAAAAGATCATGGACAGCACTTTGGAAAATGCCAGGATCCTCTTACAGACTGACAATGCCCGGCTGGCGGCTGATGACTTCAGGCTGAAGTATGAGAATGAGCTGGCCCTTCGCCAGAGCGTGGAAGCTGATATTAATGGCCTACGTAGAGTGCTCGATGAGTTGACCCTGTGCAAGGCTGATCTGGAATTGCAGATTGAAAGCTTGACAGAGGAACTGGCGTATCTGAAGAAAAATCATAAGGAGGAATTGGATGCTCTCCAAGGTGGACCTGCCGGCCAGCTCACTGTTGAGATGAATGCTGCTCCAGGAACCGACCTAACCAAGTTACTCAATGACATGAGAGAACAATATGAAACCCTTGCTGAGAAGAACAGAAGAGAAGCTGAGAGAGCATTTAATGAGCAGAGCAAAGAAANTAAGAAAGAGATCCAAGCTGGAGTGCAGCAAGTACAGTCTAACACTACAGAGATTTCAGATCTGAAACGGACC
5 1 2 bld Lmb1 IMAGE:8534537.5p CGCACTTTGGAAAATTCCAGGATCCTCTTACAGACTGACAATGCCCGGCTGGCGGCTGATGACTTCAGGCTGAAGTATGAGAACGAGCTGGCCCTTCGCCAGAGCGTGGAAGCTGATATTAATGGCCTACGTAGAGTGCTCGATGAGTTGACCCTGTGCAAGGCTGATCTGGAATTGCAGATTGAAAGCTTGACAGAGGAACTGGCGTATCTGAAGAAAAATCATAAGGAGGAATTGGATGCTCTCCAAGGTGGACCTGCTGGCCAGCTCACTGTTGAGATGAATGCTGCTCCAGGAACCGACCTGACCAAGTTACTCAATGACATGAGAGAACAATATGAAACCCTTGCTGAGAAGAACAGAAGAGAAGCTGAGAGAGCATTTAATGAGCAGAGCAAAGAAATAAAGAAAGAGATCCAAGCTGGAGTGCAGCAAGTACAGTCTAACACTACAGAGATTTCAGATCTGAAACGGACACTTCAGGGATTGGAGATAGAACTTAATGCACAGATGGCAATGAAACAATCGTTAGAGAAAACCCTGGCAGAGACAGAAGGACGCTTTTGTTCTCAGCTTGGGCAGTTACAAAACTTAATCACCAGTGTGGAGGAGCAGTTGGTCCACTGAGAATGACATGGAGCTTCAGAGCATGAGTACAACAGCTGCTGGACTTCAGACCCGTTAGAGCAGAGATAAGACTATCGCAATTGCTGAGGAAAGGAGATACTGCTCCTGGAGCAGAGCTCTTCAATTTCAAGATCTCCGAAAAACCTAAACTATTTGAAAGGGGGAGAAAGATC
5 1 2 bld Lmb2 IMAGE:8638799.5p ATCCTCTTACAGACTGACAATGCCCGGCTGGCGGCTGATGACTTCAGGCTGAAGTATGAGAACGAGCTGGCCCTTCGCCAGAGCGTGGAAGCTGATATTAATGGCCTACGTAGAGTGCTCGATGAGTTGACCCTGTGCAAGGCTGATCTGGAATTGCAGATTGAAAGCTTGACAGAGGAACTGGCGTATCTGAAGAAAAATCATAAGGAGGAATTGGATGCTCTCCAAGGTGGACCTGCTGGCCAGCTCACTGTTGAGATGAATGCTGCTCCAGGAACCGACCTGACCAAGTTACTCAATGACATGAGAGAACAATATGAAACCCTTGCTGAGAAGAACAGAAGAGAAGCTGAGAGAGCATTTAATGAGCAGAGCAAAGAAATAAAGAAAGAGATCCCAGCTGGAGTGCAGCAAGTACAGTCTAACACTACAGAGATTTCAGATCTGAAACGGACACTTCAGGGATTGGAGATAGAACTTAATGCACAGATGGCAATGAAACAATCGTTAGAGAAAACCCTGGCAGAGACAGAAGGACGCTTTTGTTCTCAGCTTGGGCAGTTACAAAACTTAATCACCAGTGTGGAGGAGCAGTTGGTCCAACTGAGAAGTGACATGGAGCTTCAGAGCAATGAGTACAAACAGCTGCTGGACACTCAGACCCGGTTAGAGACAGAGATAGAGACATATCGCAAATTGCTGGAAGGAGAAGGANGAAACTGCTCGCTGGATGTCGATGCTCTTTCGAATTTTNCCAAGATCTACAGACAAACGCTTAACTTATATTGAAAGTGTGATGGAAGTGATTCAAGTGCAGAAGTGAG
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