Gurdon Institute Xenopus laevis EST Database
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Application in use by Guest User - 07 Mar 2021 - database INFO-PUBLIC
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By Clone or Sequence Name
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Related Clusters
CS% VC Transcript Size Type Links % In % Out Identified Blast Description.
1 2.0 0Xl3.1-xl335i08.3 6 END 2 33 33 hypothetical protein LOC100036925 [Xenopus laevis]
This cluster: approximate FL confidence score = 0%
1012781060 Xl3.1-IMAGE:8543876.5 - 6 ESTs
......-60.......-50.......-40.......-30.......-20.......-10.......0.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760.......770.......780.......790.......800.......810.......820.......830.......840.......850.......860.......870.......880.......890.......900.......910.......920.......930.......940.......950...
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Xl3.1-IMAGE:8543876.5 GCCCTGCTCTGTGCTGCTGGAGCTGCAGACATGACCGGCTTTTGTTGGAGAAAATCGGGACTGTTGGGCGATATGGAGGAAGACAGACTTGGTCGCTGCCGAAGTGTTAAGGAGTTTGAGAAATTAAATCGCATTGGTGAAGGAACTTATGGTATAGTATATCGTGCCAGAGATACGAAGAGCAATGAAATAGTTGCACTGAAGAAGGTGAGAATGGACAAAGAGAAAGATGGTATCCCCATAAGCAGCCTACGGGAGATAACTCTCCTACTTAAATTGCGACATCCCAACATTGTGGAGCTGAAGGAAGTAGTTGTTGGAAATCACCTAGAAAGTATCTTTCTGGTTATGGGATACTGTGAACAAGACCTGGCCAGTCTTCTGGAGAATATGCAAACCCCATTCTCAGAAGCCCAGGTGAAATGCATCTGCTTCCAGCTCCTCACTGGGCTTCAGTATCTCCATGAGAGCTTTATAGTGCATAGAGATCTGAAGGTATCCAACCTGCTCATGACTGATAAAGGCTGTGTGAAGATCGCTGACTTCGGCCTGGCTCGTGCTTTTAGCACCCCTGCAAAGCAGATGACTCCTAAAGTGGTGACTCTATGGTACCGGGCCCCTGAACTTCTCCTGGGAAGCACTACACAGACAACAGCTATAGACATGTGGGCTGTTGGTTGCATACTGGCTGAGCTC
Xl3.1-CHK-1012702929 CTCTGTGCTGCTGGAGCTGCAGACATGACCGGCTTTTGTTGGAGAAAATCGGGACTGTTGGGCGATATGGAGGAAGACAGACTTGGTCGCTGCCGAAGTGTTAAGGAGTTTGAGAAATTAAATCGCATTGGTGAAGGAACTTATGGTATAGTATATCGTGCCAGAGATACGAAGAGCAATGAAATAGTTGCACTGAAGAAGGTGAGAATGGACAAAGAGAAAGATGGTATCCCCATAAGCAGCCTACGGGAGATAACTCTCCTACTTAAATTGCGACATCCCAACATTGTGGAGCTGAAGGAAGTAGTTGTTGGAAATCACCTAGAAAGTATCTTTCTGGTTATGGGATACTGTGAACAAGACCTGGCCAGTCTTCTGGAGAATATGCAAACCCCATTCTCAGAAGCCCAGGTGAAATGCATCTGCTTCCAGCTCCTCACTGGGCTTCAGTATCTCCATGAGAGCTTTATAGTGCATAGAGATCTGAAGGTATCCAACCTGCTCATGACTGATAAAGGCTGTGTGAAGATCGCTGACTTCGGCCTGGCTCGTGCTTTTAGCACCCCTGCAAAGCAGATGACTCCTAAAGTGGTGACTCTATGGTACCGGGCCCCTGAACTTCTCCTGGGAAGCACTACACAGACAACAGCTATAGACATGTGGGCTGTTGGTTGCATACTGGCTGAGCTCCTGGCT
consensus depths 2 3 3 3 3 3 4 4 4 4 4 4 4 4 4 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 5 6 5 6 5 6 5 6 5 6 5 6 5 6 5 6 5 6 5 6 4 6 5 6 4 6 5 6 4 6 5 6 5 5 4 5 4 4 3 4 3 3 3 3 3 3
BLH MIN 25 137
5 1 2 seed DMZ out xl335i08.5p CGGGGAGGAGACTGAATGAGCTAGCACAGGTCCGCCTCCTCCGTGACATCATCAGCTGCTGCCCTAGCCCTGCTCTGTGCTGCTGGAGCTGCAGACATGACCGGCTTTTGTTGGAGAAAATCGGGACTGTTGGGCGATATGGAGGAAGACAGACTTGGTCGCTGCCGAAGTGTTAAGGAGTTTGAGAAATTAAATCGCATTGGTGAAGGAACTTATGGTATAGTATATCGTGCCAGAGATACGAAGAGCAATGAAATAGTTGCACTGAAGAAGGTGAGAATGGACAAAGAGAAAGATGGTATCCCCATAAGCAGCCTACGGGAGATAACTCTCCTACTTAAATTGCGACATCCCAACATTGTGGAGCTGAAGGAAGTAGTTGTTGGAAATCACCTAGAAAGTATCTTTCTGGTTATGGGATACTGTGAACAAGACCTGGCCAGTCTTCTGGAGAATATGCAAACCCCATTCTCAGAAGCCCAGGTGAAATGCATCTGCTTCCAGCTCCTCACTGGGCTTCAGTATCTCCATGAGAGCTTTATAGTGCATAGAGATCTGAAGGTATCCAACCTGCTCATGACTGATAAAGGCTGTGTGAAGATCGCTGACTTTGGCCTGGCTCGTGCTTTTAGCACCCCTGCAAAGCAGATGACTCCTAAAGTGGTGACTCTATGGTACCGGGCCCCTGAACTTCTCCTGGGAAGCACTACAC
5 1 2 bld Tail IMAGE:8543876.5p AAGNNGCCCATGCGTGCNNNANGNGTACCTAATAAATTCGTCCCCTGTGCTGCTGGAGCTGCAGACATGACCGGCTTTTGTTGGAGAAAATCGGGACTGTTGGGCGATATGGAGGAAGACAGACTTGGTCGCTGCCGAAGTGTTAAGGAGTTTGAGAAATTAAATCGCATTGGTGAAGGAACTTATGGTATAGTATATCGTGCCAGAGATACGAAGAGCAATGAAATAGTTGCACTGAAGAAGGTGAGAATGGACAAAGAGAAAGATGGTATCCCCATAAGCAGCCTACGGGAGATAACTCTCCTACTTAAATTGCGACATCCCAACATTGTGGAGCTGAAGGAAGTAGTTGTTGGAAATCACCTAGAAAGTATCTTTCTGGTTATGGGATACTGTGAACAAGACCTGGCCAGTCTTCTGGAGAATATGCAAACCCCATTCTCAGAAGCCCAGGTGAAATGCATCTGCTTCCAGCTCCTCACTGGGCTTCAGTATCTCCATGAGAGCTTTATAGTGCATAGAGATCTGAAGGTATCCAACCTGCTCATGACTGATAAAGGCTGTGTGAAGATCGCTGACTTCGGCCTGGCTCGTGCTTTTAGCACCCCTGCAAAGCAGATGACTCCTAAAGTGGTGACTCTATGGTACCGGGCCCCTGAACTTCTCCTGGGAAGCACTACACAGACAACAGCTATAGACATGTGGGCTGTTGGTTGCATACTGGCTGAGCTCCTGGCTCCAAGCCGCTTCTCCCCAGAGTCAGAAATCAGCAGTTTGATTGATATACACTGCTTGCACACTATGAAACATTGGCAGCTTCCAAGCTGCTTAGTGTCATCACGTACTAGCAGCTCACAATTAACCATT
5 1 2 bld Tail out IMAGE:8542150.5p GAGTACCTAAAAAATTCNTCCAGCCCTGCTCTGTGCTGCTGGAGCTGCAGACATGACCGGCTTTTGTTGGAGAAAATCGGGACTGTTGGGCGATATGGAGGAAGACAGACTTGGTCGCTGCCGAAGTGTTAAGGAATTTGAGAAATTAAATCGCATTGGTGAAGGAACTTATGGTATAGTATATCGTGCCAGAGATACGAAGAGCAATGAAATAGTTGCACTGAAGAAGGTGAGAATGGACAAAGAGAAAGATGGTATCCCCATAAGCAGCCTACGGGAGATAACTCTCCTACTTAAATTGCGACATCCCAACATTGTGGAGCTGAAGGAAGTAGTTGTTGGAAATCACCTAGAAAGTATCTTTCTGGTTATGGGATACTGTGAACAAGACCTGGCCAGTCTTCTGGAGAATATGCAAACCCCATTCTCAGAAGCCCAGGTGAAATGCATCTGCTTCCAGCTCCTCACTGGGCTTCAGTATCTCCATGAGAGCTTTATAGTGCATAGAGATCTGAAGGTATCCAACCTGCTCATGACTGATAAAGGCTGTGTGAAGATCGCTGACTTTGGCCTGGCTCGTGCTTTTAGCACCCCTGTCAAGCAGATGACTCTCTAAGTGGTGACTCTATGGTACCGGGCCCCTGAACTTCTCTTGGGAAGCACTACACAGACNACAGCTATAGACATGTGGGCTGTTGGTTGCATACTGGCTGAGCTCCTTGCTCACAGCCGCTTCTTCAGGAGTTCAGAATCCAGCAGATGATTTGATATACGCTGCTTGGCCACTAATGAACCTTTGGCAGCTTCCAAGCTGCTTTATGGTCATCAC
5 1 2 bld Ooc3 IMAGE:3436449.5p ACCGGCTTTTGTTGGAGAAAATCGGGACTGTTGGGCGATATGGAGGAAGACAGACTTGGTCGCTGCCGAAGTGTTAAGGAATTTGAGAAATTAAATCGCATTGGTGAAGGAACTTATGGTATAGTATATCGTGCCAGAGATACGAAGAGCAATGAAATAGTTGCACTGAAGAAGGTGAGAATGGACAAAGAGAAAGATGGTATCCCCATAAGCAGCCTACGGGAGATAACTCTCCTACTTAAATTGCGACATCCCAACATTGTGGAGCTGAAGGAAGTAGTTGTTGGAAATCACCTAGAAAGTATCTTTCTGGTTATGGGATACTGTGAACAAGACCTGGCCAGTCTTCTGGAGAATATGCAAACCCCATTCTCAGAAGCCCAGGTGAAATGCATCTGCTTCCAGCTCCTCACTGGGCTTCAGTATCTCCATGAGAGCTTTATAGTGCATAGAGATCTGAAGGTATCCAACCTGCTCATGACTGATAAAGGCTGTGTGAAGATCGCTGACTTCTGCCTGTCTCGTGCTTATAGCACTCCTGTAATATAGATGACTGCTAAAGTGGTGACTCTATGGTACCGGGCCCCTGATCTATTGCATGGTAAGCCTACACAGACTACATCTATAGACATG
5 1 2 bld Tbd7 XL067i22.5p GGNCTGCAGGNAATTCGGCACGAGGNCGAAGTGTTAAGGAGTTTGAGAAATTAAATCGCATTGGTGAAGGAACTTATGGTATAGTATATCGTGCCAGAGATACGAAGAGCAATGAAATAGTTGCACTGAAGAAGGTGAGAATGGACAAAGAGAAAGATGGTATCCCCATAAGCAGCCTACGGGAGATAACTCTCCTACTTAAATTGCGACATCCCAACATTGTGGAGCTGAAGGAAGTAGTTGTTGGAAATCACCTAGAAAGTATCTTTCTGGTTATGGGATACTGTGAACAAGACCTGGCCAGTCTTCTGGAGAATATGCAAACCCCATTCTCAGAAGCCCAGGTAAAGACTTGTTATTTTTTCCGTCCCACTCCAAGCTTGCTGAAATTACAGATGAGCAGATAACTGATTTCATATTTACCATACAGTAATATATTTGCTGTATACTAATTATAGCGAAAGGTTGTACATTTGCAGAGATTTATATGGAAGATGAGGATCCAGATCACAGGATAACATTCCCATCTTGATCTATAGAT
5 1 2 bld Brn3 IMAGE:8537093.5p GGACAAGAGAAAGATGGTATCCCCATAAGCAGCCTACGGGAGATAACTCTCCTACTTAAATTGCGACATCCCAACATTGTGGAGCTGAAGGAAGTAGTTGTTGGAAATCACCTAGAAAGTATCTTTCTGGTTATGGGATACTGTGAACAAGACCTGGCCAGTCTTCTGGAGAATATGCAAACCCCATTCTCAGAAGCCCAGGTGAAATGCATCTGCTTCCAGCTCCTCACTGGGCTTCAGTATCTCCATGAGAGCTTTATAGTGCATAGAGATCTGAAGGTATCCAACCTGCTCATGACTGATAAAGGCTGTGTGAAGATCGCTGACTTCGGCCTGGCTCGTGCTTTTAGCACCCCTGCAAAGCAGATGACTCCTAAAGTGGTGACTCTATGGTACCGGGCCCCTGAACTTCTCCTGGGAAGCACTACACAGACAACAGCTATAGACATGTGGGCTGTTGGTTGCATACTGGCTGAGCTCCTGGCTCACAAGCCGCTTCTTCCAGGAAGTTCAGAAATCCAGCAGATTGATTTGATTATACAGCTGCTTGGCACACCTAATGAAAACATTTGGCCAGGCTTCTCAAAGCTGCCTTTAATTGGTCAATACACCGTATGTTATCAGCCTTACAACAATTTAAAACACAATTTTCCCCGGTTGTCTGAAGCCTGACTTCACTTACTTAATTTTCTATTTAGGTTGACCCCTAATATAAGCATTCCCTGAGGATTTCTTGCTAT
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