Gurdon Institute Xenopus laevis EST Database
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Application in use by Guest User - 08 Aug 2022 - database INFO-PUBLIC
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By Clone or Sequence Name
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Related Clusters
CS% VC Transcript Size Type Links % In % Out Identified Blast Description.
1 0.0 0Xl3.1-IMAGE:8528105.5 12 END 1 16 8 (no blast hit)
CS% VC Transcript Size Type Percent From To Identified Blast Description.
2 0.0 0Xl3.1-xl232k11.5 26 PI 77 109 485 MGC97660 protein [Xenopus tropicalis]
3 0.0 0Xl3.1-IMAGE:4683597-IMAGp.5 3 PI 93 45 445 ETS-domain protein [Xenopus laevis]
This cluster: approximate FL confidence score = 94%
1012781384 Xl3.1-IMAGE:6862945.5 - 6 ESTs
.-130......-120......-110......-100......-90.......-80.......-70.......-60.......-50.......-40.......-30.......-20.......-10.......0.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760.......770.......780.......790.......800.......810.......820.......830.......840.......850.......860.......870.......880..
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Xl3.1-IMAGE:6862945.5 GGAACGGCGGCGGAGCTGTGACCTAGCGGTCGATCCCGTCAGCAAGAAGGAAACATGAAAACTGGCTGTAGCATTGGGGAAAAGCCCAAAGGAGGGGGAGGTTATCACTTCCCAGACTGGGCGTACAAGGCGGAGTCAAGTCCCGGCTCCCGACAGATCCAGCTGTGGCATTTTATTTTGGAACTGCTGCAGAAGGAGGAGTTTCGACATGTTATTGCCTGGCAGCAGGGGGAATATGGAGAGTTTGTGATTAAAGACCCAGATGAGGTGGCCAGGCTATGGGGCCGGCGCAAATGCAAACCTCAGATGAACTACGACAAGCTGAGCCGAGCTCTGAGATACTATTACAACAAGCAGATCCTGCATAAAACAAAAGGAAAGCGTTTTACCTACAAATTCAACTTCAACAAACTGGTTATGCCCAATTATCCTTTCATCAACATCCGACCTAACGGTGCTGTCCCTCAGAGTGCTCCACCTGTTCCAACTGCATCCTCCCATTTTCACTTCCCTCCACTAGACTCCCCCAGCGAAGACGCCCACGGAAGCCGTTTCTCTGGGAACTCCACCGCGCAGTCCAGCCGCGAGTCTTTGAACGAGGTCACCGATCGCAAGACAAATGCATCGGAACAAGATGACCTTTCCTCCGATTGGCGGCGTAGTGCAGACCTTCTGGCCCCGCGTAATCCCATGGGTTTAGGCCATCGTGCTCTTCAGAAG
Xl3.1-CHK-1012702854 GCGGCGGAGCTGTGACCTAGCGGTCGATCCCGTCAGCAAGAAGGAAACATGAAAACTGGCTGTAGCATTGGGGAAAAGCCCAAAGGAGGGGGAGGTTATCACTTCCCAGACTGGGCGTACAAGGCGGAGTCAAGTCCCGGCTCCCGACAGATCCAGCTGTGGCATTTTATTTTGGAACTGCTGCAGAAGGAGGAGTTTCGACATGTTATTGCCTGGCAGCAGGGGGAATATGGAGAGTTTGTGATTAAAGACCCAGATGAGGTGGCCAGGCTATGGGGCCGGCGCAAATGCAAACCTCAGATGAACTACGACAAGCTGAGCCGAGCTCTGAGATACTATTACAACAAGCAGATCCTGCATAAAACAAAAGGAAAGCGTTTTACCTACAAATTCAACTTCAACAAACTGGTTATGCCCAATTATCCTTTCATCAACATCCGACCTAACGGTGCTGTCCCTCAGAGTGCTCCACCTGTTCCAACTGCATCCTCCCATTTTCACTTCCCTCCACTAGACTCCCCCAGCGAAGACGCCCACGGAAGCCGTTTCTCTGGGAACTCCACCGCGCAGTCCAGCCGCGAGTCTTTGAACGAGGTCACCGATCGCAAGACAAATGCATCGGAACAAGATGACCTTTCCTCCGATTGGCGGCGTAGTGCAGACCTTCTGGCCCCGCGTAATCCCATGGGTTTAGGCCATCGTGCTCTTCAGAAGCACAAA
consensus depths 3 3 3 3 5 5 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 5 6 6 6 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 4 5 4 4 3 4 4 4 4 4 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 3 3 3 3 3 3 3 2 3 3 3 2 2 2 2 2 2
BLH ATG 54 430
BLH MIN 54 107
BLH OVR 54 288
CDS MIN 54 1
EST CLI -12 1
ORF LNG 54 12
5 1 2 bld Tbd7 5g XL107d05.5p TCTACGCGACGTCACTGACGACGCCCCCGCTAGCGCAGTGGGAGGTGGGAAGGCCAAGCCGGAAGTGGGATTAATAAGGCGGNAGGCACTTNCTGTTCGNTTGTATGTGGAGTCTGGAGAAGGAAACGACAGGAACGGCGGCGGAGCTGTGACCTAGCGGTCGATCCCGTCAGCAAGAAGGAAACATGAAAACTGGCTGTAGCATTGGGGAAAAGCCCAAAGGAGGGGGAGGTTATCACTTCCCAGACTGGGCGTACAAGGCGGAGTCAAGTCCCGGCTCCCGACAGA
5 1 2 bld Egg1 5x3 out IMAGE:3300390.5p GCACGAGGGACAGGAACGGCGGCGGAGCTGTGACCTAGCGGTCGATCCCGTCAGCAAGAAGGAAACATGAAAACTGGCTGTAGCATTGGGGAAAAGCCCAAAGGAGGGGGAGGTTATCACTTCCCAGACTGGGTGTACAAGGCGGAGTCAAGTCCCGGCTCCAGACAGATCCAGCTGTGGCATTTTATTTTGGAACTGCTGCAGAAGGAGGAGTTTCGACATGTTATTGCCTGGCAGCAGGGGGAATATGGAGAGTTTGTGATTAAAGACCCAGATGAGGTGGCCAGGCTATGGGGCCGGCGCAAATGCAAACCTCAGATGAACTACGACAAGCTGAGCCGAGCTCTGAGATACTATTACAACAAGCAGATCCTGCATAAAACAAAAGGAAAGCGTTTTACTTACAAATTCAACTTCAACAAACTGGTTATGCCCAATTATCCTTTCATCAACATCCGACCTAACTGTGCTGTCCCTCA
5 1 2 seed Emb1 5g IMAGE:6862945.5p TAACGACAGGAACGGCGGCGGAGCTGTGACCTAGCGGTCGATCCCGTCAGCAAGAAGGAAACATGAAAACTGGCTGTAGCATTGGGGAAAAGCCCAAAGGAGGGGGAGGTTATCACTTCCCAGACTGGGCGTACAAGGCGGAGTCAAGTCCCGGCTCCCGACAGATCCAGCTGTGGCATTTTATTTTGGAACTGCTGCAGAAGGAGGAGTTTCGACATGTTATTGCCTGGCAGCAGGGGGAATATGGAGAGTTTGTGATTAAAGACCCAGATGAGGTGGCCAGGCTATGGGGCCGGCGCAAATGCAAACCTCAGATGAACTACGACAAGCTGAGCCGAGCTCTGAGATACTATTACAACAAGCAGATCCTGCATAAAACAAAAGGAAAGCGTTTTACCTACAAATTCAACTTCAACAAACTGGTTATGCCCAATTATCCTTTCATCAACATCCGACCTAACGGTGCTGTCCCTCAGAGTGCTCCGCCTGTTCCAACTGCATCCTCCCATTTTCACTTCCCTCCACTAGACTCCCCCAGCGAAGACGCCCACGGAAGCCGTTTCTCTGGGAACTCCACCGCGCAGTCCAGCCGCGAGTCTTTGAACGAGGTCACCGATCGCAAGACAAATGCATCGGAACAAGATGACCTTTCCTCCGATTGGCGGCGTAGTGCAGACCTTCTGGCCCCGCGTAATCCCATGGGTTTAGGCCATCGTGCTCTTCAGAAGCACAAATCCGATCTCATGCTCCCTGTTTTTCCGATGCCCAGGATGTATGCCGACCCCCCAACCATTGCTTGTCTCTCTCTGGCGCGGAGCTCCGAAATTCACTCACTGCCTACCTCATCGACGGCTTTCTTAACTCCGCTCAACGTTCAACCGGCTGCTACCGTC
5 1 2 bld Ga12 5g3 out XL213h06.5p ACGAGGGACCTAGCGGTCGATCCCGTCAGCAAGAAGGAAACATGAAAACTGGCTGTAGCATTGGGGAAAAGCCCAAAGGAGGGGGAGGTTATCACTTCCCAGACTGGGCGTACAAGGCGGAGTCAAGTCCCGGCTCCCGACAGATCCAGCTGTGGCATTTTATTTTGGAACTGCTGCAGAAGGAGGAGTTTCGACATGTTATTGCCTGGCAGCAGGGGGAATATGGAGAGTTTGTGATTAAAGACCCAGATGAGGTGGCCAGGCTATGGGGCCGGCGCAAATGCAAACCTCAGATGAACTACGACAAGCTGAGCCGAGCTCTGAGATACTATTACAACAAGCAGATCCTGCATAAAACAAAAGGAAAGCGTTTTACCTACAAATTCAACTTCAACAAACTGGTTATGCCCAATTATCCTTTCATCAACATCCGACCTAACGGTGCTGTCCCTCAGAGTGCTCCACCTGTTCCAACTGCATCCTCCCATTTTCACTTCCCTCCACTAGACTCCCCCAGCGAAGACGCCCACGGAAGCCGGTTCTCTGGGAACTCCACCGCGCAGTCCAGCCGCGAGTCTTTGAACGAGGTCACCGATCGTAAGACAAATGCATCGGAACAAGATGACCTATCCTCCGATTGGCGGCGTAGTGCAGACCTTCTGGCCCCGCGTAATCCCAT
5 1 2 bld Ga18 5g xlk7i07ex.5p GACCTAGCGGTCGATCCCGTCAGCAAGAAGGAAACATGAAAACTGGCTGTAGNATTGGGGAAAAGCCCAAANGAGGGGGAGGTTATCACTTCCCAGACTGGGCGTACAAGGCGGAGNNNNGTCCCGGCTCCCGACAGATCCAGCTGTGGNATTTTATTTTGGAACTGCTGCAGAAGGAGGAGTTTCGACATGTTATTGCCTGGNAGCAGGGGGAATATGGAGAGNTTGTGATTAAAGACCCAGATGAGGTGGCCAGGCTATGGGGCCGGCGCAAATGCAAACCTCAGATGAACTACGACAAGCTGAGCCGAGCTCTGAGATACTATTACAACAAGCAGATCCTGCATAAAACAAAAGGAAAGCGTTTTACCTACAAATTCAACTTCAACAAACTGGNTATGCCAAATTATCCTTTCATCAACATCCGACCTAATGGTGCTGTCCCTCAGAGTGCTCCGNCTGTTCCAACTGCATCCTCCCATTTTCACTTCCCTCCACTAGACTCCCCCAGCGAAGANGCCCACGGAAGCCGTTTCTCTGGGAACTCCACCGCGCAGNCCAGCCGCGAGTCTTTGAACGAGGNCACCGATCGCAAGACAAATGCATCGGAACAAGATGACCTTTCCTCCGATTGGCGGCGTAGTGNAGANCTTCTGGCCCCNCGTAATCCCATGGGTTTAGGNCATCGTGCTCTTCAGAAGCACAATCCGATCTCATGNNNCCTGTTTTTNCGATGCCAG
5 1 2 bld Ga12 5x3 out XL168e20.5p CGGTCGATCCCGTAGCAAGAAGGAAACATGAAAACTGGCTGTAGCATTGGGGAAAAGCCCAAAGGAGGGGAAGGTTATCACTTCCCAGACTGGGCGTACAAGGCGGAGTCAAGTCCCGGCTCCCGACAGATCCAGCTGTGGCATTTTATTTTGGAACTGCTGCAGAAGGAGGAGTTTCGACATGTTATTGCCTGGCAGCAGGGGGAATATGGAGAGTTTGTGATTAAAGACCCAGATGAGGTGGCCAGGCTATGGGGCCGGCGCAAATGCAAACCTCAGATGAACTACGACAAGCTGAGCCGAGCTCTGAGATACTATTACAACAAGCAGATCCTGCATAAAACAAAAGGAAAGCGTTTTACCTACAAATTCAACTTCAACAAACTGGTTATGCCCAATTATCCTTTCATCAACATCCGACCTAACGGTGCTGTCCCTCAGAGTGCTCCACCTGTTCCAACTGCATCCTCCCATTTTCACTTCCCTC
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