Gurdon Institute Xenopus laevis EST Database
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Application in use by Guest User - 11 Apr 2021 - database INFO-PUBLIC
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By Clone or Sequence Name
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Related Clusters
CS% VC Transcript Size Type Links % In % Out Identified Blast Description.
1 1.0 0Xl3.1-IMAGE:6864414.5 3 END 1 9 33 MGC83327 protein [Xenopus laevis]
CS% VC Transcript Size Type Percent From To Identified Blast Description.
2 0.0 0Xl3.1-IMAGE:6864414.5 3 PI 92 9 430 MGC83327 protein [Xenopus laevis]
This cluster: approximate FL confidence score = 96%
1012782844 Xl3.1-IMAGE:4756924-IMAGp.5 - 11 ESTs
..-70.......-60.......-50.......-40.......-30.......-20.......-10.......0.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760.......770.......780.......790.......800.......810.......820.......830.......840.......850.......860.......870.......880.......890.......900.......910.......920.......930.......940.......950.......960.......970.......980.......990.......1000......1010......1020......1030......1040......1050......1060......1070......1080......1090......1100......1110......1120......1130......1140......1150......1160......1170......1180......1190......1200......1210......1220......1230......1240......1250......1260......1270......1280......1290......1300......1310
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Xl3.1-IMAGE:4756924-IMAGp.5 CAGACCCAGCAGCAGCAGCAGCAGCATGGCCGCCTGATCAGCTTCCCAGAGCCCCCAATGCAGCCAGAGCGCAGCCCCCAGAGCATGACAGGAGTCTATGAGCGGAGAGTCGCCTCCATCCGAGCCAGTGAGTTCCAGAGCATGATGCACCACCCTTCCCAGGATTCCCCCACTCTGCCCGAATCCACGGCCACTGACTCTGGCTACTACAGCCCGGGAGCAGCCGCTGGCCACCCTCACCATGGCTACTGTTCGCCCACTTCGGCCACTTATGGAAAGGCGCTGAATGCGTATCAGTACCAGTACCATGGCATGAATGGAGCAGCTGCAAACTACTCTGGCAAAGCCTACAGCGACTATGGCTATGGGAGCCCTTACCACCCTCACCACCAGTACAGCGGAGCGTATAACAGGGTGCAGCCCCCCAGCACTCAGCCAGAGAAAGAAGTATCAGAGCCCGAGGTGAGAATGGTAAATGGAAAACCGAAGAAAATCCGAAAACCGCGCACCATCTACTCCAGCTTTCAACTCGCAGCGTTACAAAGACGCTTCCAGAAGACGCAGTACTTGGCGCTGCCGGAACGCGCAGAACTGGCGGCATCGCTGGGACTAACGCAAACACAGGTAAAAATATGGTTTCAGAATAAAAGATCCAAAATTAAGAAAATCATGAAGAACGGAGAGCTGCCTCCAGAACACAGTCCCAGTTCCAGTGACCCCATGGCGTGTAATTCTCCCCAGTCTCCAGTGGTGTGGGAACCCCAAGGATCCTCAAGGTCACTCAGCCACCACCCCCATGTACATTCCCACCCCCAGCCCTCCAGCAGCTCCCCTGCATCCTCCTATCTGGAGAACTCGGGCGTCTGGTACCCTACAGGCACCCACCTGCAGAACCTGCAGAACCATGCCTCTTTACAGCACCCCTTGGCCTTGGCATCAGGGACTCTCTACTAAAAGCCACCTGGGCTTCTTTTTGTCTTTTTATTTTTGGACTATCATTTTTTCATTGTTAAGGAGTCATACAAACCAATGCATAAGATGGATTTTTTTTAAGGCAAAGTATATTGTGTAAAGCTTGTTGCATGTAACTTATTGCATTTCAAAGGAGACCGTGTGTTTTTTACAGATTGTCTTTGCGCAACTGGGGACACTATCTCAATGGTGCCTTGAATCTATGACCTCATTTTTTTCCAGAGACTTTTTTTTCAATGTTTATTTTAACCGTGTAAATACATGTAGATAGAGGAATTAAACTGTATA
Xl3.1-CHK-1012694485 CAGCAGCAGCAGCAGCAGCATGGCCGCCTGATCAGCTTCCCAGAGCCCCCAATGCAGCCAGAGCGCAGCCCCCAGAGCATGACAGGAGTCTATGAGCGGAGAGTCGCCTCCATCCGAGCCAGTGAGTTCCAGAGCATGATGCACCACCCTTCCCAGGATTCCCCCACTCTGCCCGAATCCACGGCCACTGACTCTGGCTACTACAGCCCGGGAGCAGCCGCTGGCCACCCTCACCATGGCTACTGTTCGCCCACTTCGGCCACTTATGGAAAGGCGCTGAATGCGTATCAGTACCAGTACCATGGCATGAATGGAGCAGCTGCAAACTACTCTGGCAAAGCCTACAGCGACTATGGCTATGGGAGCCCTTACCACCCTCACCACCAGTACAGCGGAGCGTATAACAGGGTGCAGCCCCCCAGCACTCAGCCAGAGAAAGAAGTATCAGAGCCCGAGGTGAGAATGGTAAATGGAAAACCGAAGAAAATCCGAAAACCGCGCACCATCTACTCCAGCTTTCAACTCGCAGCGTTACAAAGACGCTTCCAGAAGACGCAGTACTTGGCGCTGCCGGAACGCGCAGAACTGGCGGCATCGCTGGGACTAACGCAAACACAGGTAAAAATATGGTTTCAGAATAAAAGATCCAAAATTAAGAAAATCATGAAGAACGGAGAGCTGCCTCCAGAACACAGTCCCAGTTCCAGTGACCCCATGGCGTGTAATTCTCCCCAGTCTCCAGTGGTGTGGGAACCCCAAGGATCCTCAAGGTCACTCAGCCACCACCCCCATGTACATTCCCACCCCCAGCCCTCCAGCAGCTCCCCTGCATCCTCCTATCTGGAGAACTCGGGCGTCTGGTACCCTACAGGCACCCACCTGCAGAACCTGCAGAACCATGCCTCTTTACAGCACCCCTTGGCCTTGGCATCAGGGACTCTCTACTAAAAGCCACCTGGGCTTCTTTTTGTCTTTTTATTTTTGGACTATCATTTTTTCATTGTTAAGGAGTCATACAAACCAATGCATAAGATGGATTTTTTTTAAGGCAAAGTATATTGTGTAAAGCTTGTTGCATGTAACTTATTGCATTTCAAAGGAGACCGTGTGTTTTTTACAGATTGTCTTTGCGCAACTGGGGACACTATCTCAATGGTGCCTTGAATCTATGACCTCATTTTTTTCCAGAGACTTTTTTTTCAATGTTTATTTTAACCGTGTAAATACATGTAGATAGAGGAATTAAACTGTATATTCTGG
consensus depths 2 2 4 4 4 4 4 4 4 4 4 4 4 4 4 4 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 4 5 5 5 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 4 4 4 4 4 4 5 5 5 5 5 5 5 5 3 6 4 6 3 5 3 5 3 5 3 5 3 5 4 5 5 6 5 5 4 5 4 5 4 5 4 5 4 5 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 5 5 6 5 6 4 6 5 6 5 6 5 6 4 6 5 6 5 6 5 6 4 6 4 6 5 6 5 5 5 5 5 5 5 5 5 5 3 5 3 5 3 5 2 5 3 4 2 3
BLH ATG 57 976
BLH MIN 57 129
BLH MPR 36 129
BLH OVR 57 247
CDS MIN 57 129
ORF LNG 57 12
5 1 2 bld Ga15 5g3 in XL456n02ex.5p CcctcctctctctctcctcctcctcctcACTGATCACTAAGGATCCTTCCCAAGAGCTCACTATTTCAGTGGCAGACCcagcagcagcagcagcagcaTGGCCGCCTGATCAGCTTCCCAGAGCCCCCAATGCAGCCAGAGCGCAGCCCCCAGAGCATGACAGGAGTCTATGAGCGGAGAGTCGCCTCCATCCGAGCCAGTGAGTTCCAGAGCATGATGCACCACCCTTCCCAGGATTCCCCGACTCTGCCCGAATCCACGGCCACTGACTCTGGCTACTACAGCCCGGGAGCAGCCGCTGGCCACCCTCACCATGGCTACTGTTCGCCCACTTCGGCCACTTATGGAAAGGCGCTGAATGCGTATCAGTACCAGTACCATGGCATGAATGGAGCAGCTGCAAACTACTCTGGCAAAGCCTACAGCGACTATGGCTATGGGAGCCCTTACCACCCTCACCACCAGTACAGCGGAGCGTATAACAGGGTGCAGCCCCCCAGCACTCAGCCAGAGAAAGAAGTATCAGAGCCCGAGGTGAGAATGGTAAATGGAAAACCGAAGAAAATACGAAAACCGCGCACCATCTACTCCAGCTTTCAACTCGCAGCGTTACAAAGACGCTTCCAGAAGACGCAGTACTTGGCGCTGCCGGAACGCGCAGAACTGGCGGCATCGCTGGGACTAACGCAAACACAGGTAAAAATATGGTTTCAGAATAAAAGATCCAAAATTAAGAAAATCATGAAGAACGGAGAGCTGCCTCCAGAACACAGTCCCAGTTCCAGTGACCCCAT
5 1 2 seed Eye1 5g IMAGE:4756924-IMAGp.IMAGp CAGACCcagcagcagcagcagcagcaTGGCCGCCTGATCAGCTTCCCAGAGCCCCCAATGCAGCCAGAGCGCAGCCCCCAGAGCATGACAGGAGTCTATGAGCGGAGAGTCGCCTCCATCCGAGCCAGTGAGTTCCAGAGCATGATGCACCACCCTTCCCAGGATTCCCCCACTCTGCCCGAATCCACGGCCACTGACTCTGGCTACTACAGCCCGGGAGCAGCCGCTGGCCACCCTCACCATGGCTACTGTTCGCCCACTTCGGCCACTTATGGAAAGGCGCTGAATGCGTATCAGTACCAGTACCATGGCATGAATGGAGCAGCTGCAAACTACTCTGGCAAAGCCTACAGCGACTATGGCTATGGGAGCCCTTACCACCCTCACCACCAGTACAGCGGAGCGTATAACAGGGTGCAGCCCCCCAGCACTCAGCCAGAGAAAGAAGTATCAGAGCCCGAGGTGAGAATGGTAAATGGAAAACCGAAGAAAATCCGAAAACCGCGCACGATCTACTCCAGCTTTCAACTCGCAGCATTACAAAGACGCTTCCAGAAGACGCAGTACTTGGCGCTGCCGGAACGCGCAGAACTGGCGGCATCGCTGGGACTAACGCAAACACAGGTAAAAATATGGTTTCAGAATAAAAGATCCAAAATTAAGAAAATCATGAAGAACGGAGAGCTGCCTCCAGAACACAGTCCCAGTTCCAGTGACCCCATGGCGTGTAATTCTCCCCAGTCTCCAGTGGTGTGGGAACCCCAAGGATCCTCAAGGTCACTCAGCCACCACCCCCATGTACATTCCC
5 1 2 bld Ga15 5g3 in XL461h20ex.5p CCcagcagcagcagcagcaNCATGGCCGCCTGATCAGCTTCCCAGAGCCCCCAATGCAGCCAGAGCGCAGCCCCCAGAGCATGACAGGAGTCTATGAGCGGAGAGTCGCCTCCATCCGAGCCAGTGAGTTTCAGAGCATGATGCACCACCCTTCCCAGGATTCCCCGACTCTGCCCGAATCCACGGCCACTGACTCTGGCTACTACAGCCCGGGAGCAGCCGCTGGCCACCCTCACCATGGCTACTGTTCGCCCACTTCGGCCACTTATGGAAAGGCGCTGAATGCGTATCAGTACCAGTACCATGGCATGAATGGAGCAGCTGCAAACTACTCTGGCAAAGCCTACAGCGACTATGGCTATGGGAGCCCTTACCACCCTCACCACCAGTACAGCGGAGCGTATAACAGGGTGCAGCCCCCCAGCACTCAGCCAGAGAAAGAAGTATCANAGCCCGAGGTGAGAATGGTAAATGGAAAACCGAAGAAAATCCGAAAACCGCGCACCATCTACTCCAGCTTTCAACTCGCAGCGTTACAAAGACGCTTCCAGAAGACGCAGTACTTGGCGCTGCCGGAACGCGCAGAACTGGCGGNATCGCTGGGACTAA
5 1 2 bld Brn1 5g IMAGE:6953843.5p cagcagcagcagcagcaTGGCCGCCTGATCAGCTTCCCAGAGCCCCCAATGCAGCCAGAGCGCAGCCCCCAGAGCATGACAGGAGTCTATGAGCGGAGAGTCGCCTCCATCCGAGCCAGTGAGTTCCAGAGCATGATGCACCACCCTTCCCAGGATTCCCCCACTCTGCCCGAATCCACGGCCACTGACTCTGGCTACTACAGCCCGGGAGCAGCCGCTGGCCACCCTCACCATGGCTACTGTTCGCCCACTACGGCCACTTATGGAAAGGCGCTGAATGCGTATCAGTACCAGTACCATGGCATGAATGGAGCAGCTGCAAACTACTCTGGCAAAGCCTACAGCGACTATGGCTATGGGAGCCCTTACCACCCTCACCACCAGTACAGCGGAGCGTATAACAGGGTGCAGCCCCCCAGCACTCAGCCAGAGAAAGAAGTATCAGAGCCCGAGGTGAGAATGGTAAATGGAAAACCGAAGAAAATCCGAAAACCGCGCACCATCTACTCCAGCTTTCAACTCGCAGCATTACAAAGACGCTTCCAGAAGACGCAGTACTTGGCGCTGCCGGAACGCGCAGAACTGGCGGCATCGCTGGGACTAACGCAAACACAGGTAAAAATATGGTTTCAGAATAAAAGATCCAAAATTAAGAAAATCATGAAGAACGGAGAGCTGCCTCCAGAACACAGTCCCCAGTTCCAAGTGACCCCCATGGCGGTGTAATTTCTCCCCAGGTCTCCCAGTGGGTGTGGGGAACCCCCCAAGGATTCCTCCAAGGGTCCACTCAAGCCAccccccccccatggtaaatttcccaaccccccaggccctccaagcgagcttccccccgggcgatcctccccTAC
5 1 2 add Eye1 in IMAGE:4756924.5p GACAGGAGTCTATGAGCGGAGAGTCGCCTCCATCCGAGCCAGTGAGTTCCAGAGCATGATGCACCACCCTTCCCAGGATTCCCCCACTCTGCCCGAATCCACGGCCACTGACTCTGGCTACTACAGCCCGGGAGCAGGCGCTGGCCACCCTCACCATGGCTACTGCTCGCCCACTCCGGTCACTTATGCAAACGCCCTG
5 1 2 bld Brn3 IMAGE:8539804.5p ATCTACTCCAGCTTTCAACTCGCAGCGTTACAAAGACGCTTCCAGAAGACGCAGTACTTGGCGCTGCCGGAACGCGCAGAACTGGCGGCATCGCTGGGACTAACGCAAACACAGGTAAAAATATGGTTTCAGAATAAAAGATCCAAAATTAAGAAAATCATGAAGAACGGAGAGCTGCCTCCAGAACACAGTCCCAGCTCCAGTGACCCCATGGCGTGTAATTCTCCCCAGTCTCCAGTGGTGTGGGAACCCCAAGGATCCTCAAGGTCACTCAGCCACCACCCCCATGTACATTCCCACCCCCAGCCCTCCAGCAGCTCCCCTGCATCCTCCTATCTGGAGAACTCGGGCGTCTGGTACCCTACAGGCACCCACCTGCAGAACCTGCAGAACCATGCCTCTTTACAGCACCCCTTGGCCTTGGCATCAGGGACTCTCTACTAAAAGCCACCTGGGCTTctttttgtctttttatttttggactatcattttttCATTGTTAAGGAGTCATACAAACCAATGCATAAGATGGAttttttttAAGGCAAAGTATATTGTGTAAAGCTTGTTGCATGTAACTTATTGCATTTCAAAGGAGACCGTGTGTTTTTTACAGATTGTCTTTGCGCAACTGGGGACACTATCTCAATGGTGCCTTGAATCTATGACCTCAtttttttccagagacttttttttncatgtttattttAACCCGTGTAATACATGTAGATAGAGGAATTAAACTGTATATTCTGGGATAATAAATTATTNNCGACAGAAAAA
3 1 2 bld Ga15 5g3 in XL456n02ex.3p AGAATAAAAGATCCAAAATTAAGAAAATCANGAAGAACGGAGAGCTGCNTCCAGAACNCAGTCCCAGTTCCAGTGACCCCATGGCGTGTAATTCTCCCCAGTNTCCAGTGGTGTGGGAACCCCAAGGATCNTCAAGGTCACTCAGCCACCACCCCCATGTACATTCCCACCCCCAGCCCTCCAGCAGCTCCCCTGCATCCTCCTATCTGGAGAACTCGGGCGTCTGGTACCCTACAGGCACCCACCTGCAGAACCTGCAGAACCATGCCTCTTTACAGCACCCCTTGGCCTTGGCATCAGGGACTCTCTACTAAAAGCCACCTGGGCTTCTTTTTGTCTTTTTATTTTTGGACTATCATTTTTTCATTGTTAAGGAGTCATACAAACCAATGCATAAGATGGATTTTTTTTAAGGCAAAGTATATTGTGTAAAGCTTGTTGCATGTAACTTATTGCATTTCAAAGGAGACCGTGTGTTTTTTACAGATTGTCTTTGCGCAACTGGGGACACTATCTCAATGGTGCCTTGAATCTATGACCTCATTTTTTTCCAGAGACTTTTTTTTCAATGTTTATTTTAACCGTGTAAATACATGTAGATAGAGGAATTAAACTGTA
3 1 2 shim Ga12 out XL159o04.3p CCTCCAGAACACAGTCCCAGCTCCAGTGACCCCATGGCGTGTAATTCTCCCCAGTCTCCAGTGGTGTGGGAACCCCAAGGATCCTCAAGGTCACTCAAGCCACCACCCCCATGTACATTCCCACCCCCAGCCCTCCAGCAGCTCCCCTGCATCCTCCTATCTGGAGAACTCGGGCGTCTGGTACCCTACAGGCACCCACCTGCAGAACCTGCAGAACCATGCCTCTTTACAGCACCCCTTGGCCTTGGCATCAGGGACTCTCTACTAAAAGCCACCTGGGCTTCTTTTTGTCTTTTTATTTTTGGACTATCATTTTTTCATTGTTAAGGAGTCATACAAACCAATGCATAAGATGGATTTTTTTTAAGGCAAAGTATATTGTGTAAAGCTTGTTGCATGTAACTTATTGCATTTCAAAGGAGACCGTGTGTTTTTTACAGATTGTCTTTGCGCAACTGGGGACACTATCTCAATGGTGCCTTGAATCTATGACCTCATTTTTTTGCCAGAGACTTTTTTTTCAATGTTTATTTTAACCGTGTAAATACATGTAGCATAGNAGGGAATTAAGACTGTAT
3 1 2 bld Eye1 in IMAGE:4756924.3p CCCCATGTACATTCCCACCCCCAGCCCTCCAGCAGTTCCCCTGCATCCTCCTATTTGGAGAACTCGGGCGTCTGGTACCCTACAGGCACCCACCTGCAGAACCTGCAGAACCATGCCTCTTTACAGCACCCCTTGGCCTTGGCATCAGGGACTCTCTACTAAAAACCACCTGGGCTTCTTTTTGTCTTTTTATTTTTGGACTATCATTTTTTCATTGTTAAGGAGTCATACAAACCAATGCATAAGATGGATTTTTTTTAAGGCAAAGTATATTGTGTAAAGCTTGTTGCATGTAACTTATTGCATTTCAAAGGAGACCGTGTGTTTTTTACAGATTGTCTTTGCGCAACTGGGGACACTATCTCAATGGTGCCTTGAATTTATGACCTCATTTTTTTCCAGAGACTTTTTTTTCAATGTTTATTTTAACCGTGTAAATACATGTAGATAGAGGAATTAAACTGTATATTCTGGATAAATAAAATTATTTCGGCCCGGAAAAAAAAAAAAAAAAAAAAAAAA
3 1 2 add Ga15 XL423a20ex.3p CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTGGACTATCATTTTTTTCCCATTGTTAAGGAGTCATACAAACCAATGCATAAGATGGATTTTTTTTAAAGGCAAAGTATATTGTGTAAAGTTTGTTGCATGTAACTTATTGCATTTCAAAGGAGTGTTTTTTATACAGATTGTCATTGCGCAACTGGGGACACTATCTCAATGGTGCCTTGAATCTATGACCTCATTTTTTTCTCCCAGAGACCTTTTTTTCCAATGTTTATTTTANCCGTGTAAATA
3 1 2 add Ga15 5g3 in XL461h20ex.3p TTNGTCNTTNTANTTGNGGACTATCANNTNTTCATTGTTAAGGAGTCATACAAACCAATGCATAAGATGGATNTTTNTTAAGGCAAAGTATATCGTGTAAAGCTTGTTGCATGTAAGCTTATTGCATTTCAAAGGAGAGCCGTGTGTTTTTTACAGATTGTCTTTG
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