Gurdon Institute Xenopus laevis EST Database

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 Related Clusters

         CS%  VC Transcript                               Size Type    Percent  From       To     Identified Blast Description.
     1   0.0    0Xl3.1-xl245h07.5                            3 PI      90        145      733                paired domain transcription factor variant B [Xenopus laevis]

 This cluster: approximate FL confidence score = 0%

 1012790311 Xl3.1-IMAGE:6952663.5 - 3 ESTs
                                                                       ....-980......-970......-960......-950......-940......-930......-920......-910......-900......-890......-880......-870......-860......-850......-840......-830......-820......-810......-800......-790......-780......-770......-760......-750......-740......-730......-720......-710......-700......-690......-680......-670......-660......-650......-640......-630......-620......-610......-600......-590......-580......-570......-560......-550......-540......-530......-520......-510......-500......-490......-480......-470......-460......-450......-440......-430......-420......-410......-400......-390......-380......-370......-360......-350......-340......-330......-320......-310......-300......-290......-280......-270......-260......-250......-240......-230......-220......-210......-200......-190......-180......-170......-160......-150......-140......-130......-120......-110......-100......-90.......-80.......-70.......-60.......-50.......-40.......-30.......-20.......-10.......0.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760.......770.......780.......790.......800.......810.......820.......830.......840.......850.......860.......870.......880.......890......
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                                                 Xl3.1-IMAGE:6952663.5                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCCAATCCCACAGACCTACCACACCAGGGTCCTCAGTTCACATCGGGTTCCATGCTGGGCAGAACGGACACAGCATTGTCAAACTCTTACAGTGCTCTGCCACCTATGCCTAGTTTTACAATGGGCAACAATCTACCTATGCAAGTCTCATTTCCCCTGGAGTGTCAGTCCCAGTTCAAGTACCCGGCAGTGAACCTGACATGTCTCAGTACTGGCCAAGACTACAGTAAAAACCGTGTTAATTTAACCAATGACTTTATGGAAAACAGTTGGATGTTCAGCAGTATTTTATAAAGACGGGGAGACTGAGGAAAGGACTTGTGCCAAGCAGATGTGCGTAAGATACATGGGCTGTTGGAAGGAACTGCATCATGGACTTTTTGCACACAGAAGGCGTTATATCAGTTGGAACAAATCTTCATTTTGATATCCAAACTTTTATCCATTTGATGTACTATTTGTAAATTGACATTTGTATGTTATGATGACTAGAACAATGCGGACTGTATAGATGGATCTACCCCCCATTGGTCATGAAACAGATTTTTTTTTTTACAAAGGAACCCATGATCAAGCCAAGAATCTAAGAGTTTTATCAAGAGATATCAACTCCTTCTACACTTGTTTTTTTTTTTGGCACATGGATCAATGTTCCATGTTTGTATCGAACTCCTTCGCCCAGGACCCCCTAACCACCGGCCCCATCTAAAATCGTCCCTTGGTATCCCACAAAAAAAAAAAAAGGTTGACCCTTAATTTACAAAAAACATTTGGAAAAAAAAGACCAAGTAAGGAAAACCCTCAGAAGGAGAAGAAGAGACCTTTTTGGGTAAAATGGAAAAGGGAAGAATTTGGTGCTCCTTCCCAAAAATAAATCCGCAATTCCGC
                                                  Xl3.1-CHK-1012710722                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCCACAGACCTACCACACCAGGGTCCTCAGTTCACATCGGGTTCCATGCTGGGCAGAACGGACACAGCATTGTCAAACTCTTACAGTGCTCTGCCACCTATGCCTAGTTTTACAATGGGCAACAATCTACCTATGCAAGTCTCATTTCCCCTGGAGTGTCAGTCCCAGTTCAAGTACCCGGCAGTGAACCTGACATGTCTCAGTACTGGCCAAGACTACAGTAAAAACCGTGTTAATTTAACCAATGACTTTATGGAAAACAGTTGGATGTTCAGCAGTATTTTATAAAGACGGGGAGACTGAGGAAAGGACTTGTGCCAAGCAGATGTGCGTAAGATACATGGGCTGTTGGAAGGAACTGCATCATGGACTTTTTGCACACAGAAGGCGTTATATCAGTTGGAACAAATCTTCATTTTGATATCCAAACTTTTATCCATTTGATGTACTATTTGTAAATTGACATTTGTATGTTATGATGACTAGAACAATGCGGACTGTATAGATGGATCTACCCCCCATTGGTCATGAAACAGATTTTTTTTTTTACAAAGGAACCCATGATCAAGCCAAGAATCTAAGAGTTTTATCAAGAGATATCAACTCCTTCTACACTTGTTTTTTTTTTTGGCACATGGATCAATGTTCCATGTTTGTATCGAACTCCTTCGCCCAGGACCCCCTAACCACCGGCCCCATCTAAAATCGTCCCTTGGTATCCCACAAAAAAAAAAAAAGGTTGACCCTTAATTTACAAAAAACATTTGGAAAAAAAAGACCAAGTAAGGAAAACCCTCAGAAGGAGAAGAAGAGACCTTTTTGGGTAAAATGGAAAAGGGAAGAATTTGGTGCTCCTTCCCAAAAATAAATCCGCAATTCCGCTTTTTA
                                                      consensus depths                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              1     1     1     1     1     2     2     2     2     2     1     2     2     2     2     2     2     2     3     3     2     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     2     3     2     3     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     1     2     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1
                                                                       PROTEIN --- Dr ---- 4e-013     NP_571379.1 paired box gene 6a [Danio rerio] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------================================================================================================================================================
                                                                                                                             PROTEIN --- Cf ---- 1e-013     NP_001091013.1 paired box gene 6 [Canis lupus familiaris] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------=======================================================================================================================================
                                                                                                                             PROTEIN --- Mm ---- 1e-013     NP_038655.1 paired box gene 6; small eye; Dickie's small eye [Mus musculus] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------=======================================================================================================================================
                                                                                                                                                                       PROTEIN --- Hs ---- 1e-013     NP_001121084.1 paired box gene 6 isoform a [Homo sapiens] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------=======================================================================================================================================
                                                                                                                                                                       PROTEIN --- Bt ---- 9e-014     NP_001035735.1 paired box gene 6 [Bos taurus] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------=======================================================================================================================================
                                                                                                                             PROTEIN --- Gg ---- 7e-014     NP_990397.1 PAX6 protein [Gallus gallus] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------=======================================================================================================================================
                                                                                                                                                                       PROTEIN --- Xl ---- 1e-044     AAF73273.1 paired domain transcription factor variant B [Xenopus laevis] ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------===============================================================================================================================================================================================================================================================
                                                 Xl3.1-IMAGE:6952663.5                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATG---------------------------------------------------ATG------------ATG---------------ATG---------------------------------------------------------------------------------------------------------------------ATG------------ATG---------------TAA------------TGA------------------------------------------------------------------------------------------------------------------------------------------TGA---------------------------------------TAG------------------------------------------TGA------------------------------TGA------------------------------------------------------------------------------ATG------------------------------------------------------------------------------------------------------TAA---------------------------------TAA------------------------------------------ATG
                                                                   ORF                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ... open reading frame                                                                                                                                                                                                                         ]
  5   1   2       bld Ga15                               XL503b13ex.5p                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCCAATCCCACAGACCTACCACACCAGGGTCCTCAGTTCACATCGGGTTCCATGCTGGGCANAACGGACACNGCATTGTCAAACTCTTACAGTGCTCTGCCACCTATGCCTAGTTTTACAATGGGCAACNNTCTACCTATGCAAGTCTCATTTCCCCTGGAGTGTCAGTCCCAGTTCAAGTACCCGGCAGTGAACCTGACNTGTCTCAGTACTGGCCAAGACTACAGTAAAAACCGTGTTAATTTAACCAATGACTTTATGGAAAACAGTTGGATGTTCAGCAGTATTTTATAAAGACGGGGAGACTGAGGAAAGGACTTGTGCCAAGCAGATGTGCGTAAGATACATGGGCTGTTGGAAGGAACTGCATCNTGGACTTTTTGCACACAGAAGGCGTTATATCAGNTGGAACAAATCTTCNTTTTGATATCCAAACTTTTATCCATTTGATGTACTATTTGTAAATTGACATTTGTATGTTATGATGACTANAACAATGCGGACTGTATAGATGGATCTACCCCCCATTGGTCATGAAACAGAttttttttttttACAAAGGGAACCCATGATCAAGCCAAAAANCT
  5   1   2      seed Brn1                            IMAGE:6952663.5p                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACCAGTGTCCTCATTCACATCGGGTTCCATGCTGGGCAGAACGGACACAGCATTGTCAAACTCTTACAGTGCTCTGCCACCTATGCCTAGTTTTACAATGGGCAACAATCTACCTATGCAAGTCTCATTTCCCCTGGAGTGTCAGTCCCAGTTCAAGTACCCGGCAGTGAACCTGACATGTCTCAGTACTGGCCAAGACTACAGTAAAAACCGTGTTAATTTAACCAATGACTTTATGGAAAACAGTTGGATGTTCAGCAGTATTTTATAAAGACGGGGAGACTGAGGAAAGGACTTGTGCCAAGCAGATGTGCGTAAGATACATGGGCTGTTGGAAGGAACTGCATCATGGACTTTTTGCACACAGAAGGCGTTATATCAGTTGGAACAAATCTTCATTTTGATATCCAAACTTTTATCCATTTGATGTACTATTTGTAAATTGACATTTGTATGTTATGATGACTAGAACAATGCGGACTGTATAGATGGATCTACCCCCCATTGGTCATGAAACAGAtttttttttttACAAAGGAACCCATGATCAAGCCAAGAATCTAAGAGTTTTATCAAGAGATATCAACTCCTTCTACACTTGtttttttttttGGCACATGGATCAATGTTCCATGTTTGTATCGAACTCCTTCGCCCAGGACCCCCTAACCACCGGCCCCATCTAAAATCGTCCCTTGGTATCCCACaaaaaaaaaaaaaggttgacccttaatttacaaaaaacatttggaaaaaaaaGACCAAGTAAGGAAAACCCTCAGAAGGAGAAGAAGAGACCTTTTTGGGTAAAATGGAAAAGGGAAGAATTTGGTGCTCCTTCCCAAAAATAAATCCGCAATTCCGCTTTTTAATAGC
  3   1   2       bld Neu4                            IMAGE:4084634.3p                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCTATGCCTAGTTTTACAATGGGCAACAATCTACCTATGCAAGTCTCATTTCCCCTGGAGTGTCAGTCCCAGTTCAAGTACCCGGCAGTGAACCTGACATGTCTCAGTACTGGCCAAGACTACAGTAAAAACCGTGTTAATTTAACCAATGACTTTATGGAAAACAGTTGGATGTTCAGCAGTATTTTATAAAGACGGGGAGACTGAGGAAAGGACTTGTGCCAAGCAGATGTGCGTAAGATACATGGGCTGTTGGAAGGAACTGCATCATGGACTTTTTGCACACAGAAGGCGTTATATCAGTTGGAACAAATCTTCATTTTGATATCCAAACTTTTATCCATTTGATGTACTATTTGTAAATTGACATTTATATGTTATGATGACTAGAACAATGCGGACTGTATAGATGGATCTACCCCCCATTGGTCATGAAACAGATTTTTTTTTTTACAAAGGAACCCATGATCAAGCCAAGAATCTAAGAGTTTTATCAAGAGATATCAACTCCTTCTACACTTGTTTTTTTTTTTGGCACATGGATCAATGTTCCATGTTTGTATCGAACTCCTTCGCCCAGGACCCCCTAACCACCGGCCCCATCTAAAATCGTCCCTTGGTTCCCACAAG

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