Gurdon Institute Xenopus laevis EST Database

Menus
+ Application in use by Guest User - 19 Jun 2019 - database INFO-PUBLIC =
==
Introduction
Find Expressed Sequences
Unique Expressed Sequence Set
Translated ORFs
FL Clone Sets
Custom Set Data
Find Images
.
Find Expressed Sequences
Key Word Search
By Clone or Sequence Name
By Gene Symbol
Via Blast
By Plate
.
=
By Clone or Sequence Name
Enter clone name to retrieve cluster
clone or transcript name . (Qiagen Xt oligo IDs are also recognised)
which clone end? . 5' 3' cDNA
font size for cluster .
Set frame . 1 2 3 auto find
Manage display
switch off ... . expression profile related clusters menus
activate ... . blast hits
Data may take 10 - 20 seconds to download, please be patient

.
.
=

.

 Related Clusters

         CS%  VC Transcript                               Size Type    Percent  From       To     Identified Blast Description.
     1   0.0    0Xl3.1-XL110g22.3                            5 PI      80        323      744                (no blast hit)

 This cluster: approximate FL confidence score = 0%

 1012791526 Xl3.1-PBX0165G04.5 - 3 ESTs
                                                                       0.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740....
 ?   ?   ?    ?    ?     ?    ?   ? 
                                                    Xl3.1-PBX0165G04.5 GCACGAGGTTTAAGTTTCAAAGATTAATGTAAGAACTGTACAAGGGTTCTTGCTTTTTCCCTGCAGTCAGCAATGTGACTCTATTGCTCAGGTACATTATTGATTTTATCATTTGCAAGCTGAACACTTAGACGTATTATAGGCTTTTTCCTTTTAACTCCTTGAAAATGTGAATGGCTTTTGGCACACTTACTAAACTGTGCTTTTCAGGTCATCCAGAATAACGGACGTTAAAATGAAATTCTTTGCCAGGCTTCACTTTCCCTTCTGCCCATTCATTCCAGACATCTCAGGTATGATGAGTTCTAGCAGTCTCATTTGTATGTTAAGTTTTGCATTGTAAAAGGGACCTTGAGATGGTCAAAAAGGATGTTTAGACATTTCTATGAAGCTTTCATGGCTTTTTCACCATTTCACGTAATCTGTATTTGCCAACATTCCTTTTAGGCATAGTTCACTAATGTAACTGTGTTACAATGGGAAAAAAAATCTCTGTGTAAAGATCGAAGGGGTAATGAGCCATATGTGTGCTACATTATACCCTGTTGTTGACCAAAGAAGCAGTAGGATAGAGCTAACTGGGATTGTCTGGCGAACGCTGAGTATTATAATTGCAGAGGTCTATTACACATCTTGTATTGCTCTTTTATATGGATATATTTTATGTAAAGCATTACTGTTTATTAAAATCTCTGCAAGGACCATTTCTAATATGAGTTATTCTAGTTTGCACACAGCAACAGG
                                                  Xl3.1-CHK-1012713578       GGTTTAAGTTTCAAAGATTAATGTAAGAACTGTACAAGGGTTCTTGCTTTTTCCCTGCAGTCAGCAATGTGACTCTATTGCTCAGGTACATTATTGATTTTATCATTTGCAAGCTGAACACTTAGACGTATTATAGGCTTTTTCCTTTTAACTCCTTGAAAATGTGAATGGCTTTTGGCACACTTACTAAACTGTGCTTTTCAGGTCATCCAGAATAACGGACGTTAAAATGAAATTCTTTGCCAGGCTTCACTTTCCCTTCTGCCCATTCATTCCAGACATCTCAGGTATGATGAGTTCTAGCAGTCTCATTTGTATGTTAAGTTTTGCATTGTAAAAGGGACCTTGAGATGGTCAAAAAGGATGTTTAGACATTTCTATGAAGCTTTCATGGCTTTTTCACCATTTCACGTAATCTGTATTTGCCAACATTCCTTTTAGGCATAGTTCACTAATGTAACTGTGTTACAATGGGAAAAAAAATCTCTGTGTAAAGATCGAAGGGGTAATGAGCCATATGTGTGCTACATTATACCCTGTTGTTGACCAAAGAAGCAGTAGGATAGAGCTAACTGGGATTGTCTGGCGAACGCTGAGTATTATAATTGCAGAGGTCTATTACACATCTTGTATTGCTCTTTTATATGGATATATTTTATGTAAAGCATTACTGTTTATTAAAATCTCTGCAAGGACCATTTCTAATATGAGTTATTCTAGTTTGCACACAGC
                                                      consensus depths      1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     2     2     2     2     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     2     2     2     2     2     2     2     2     2     2     2     2     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1
                                                    Xl3.1-PBX0165G04.5           TAA---------------------------------------------------------------------------------------TGA------------------------------------TAG------------TAA------------------------------------TAA---------------------------------------ATG---------------------------------------------------------ATGATG---------------------ATG---------------TAA---------TGA------------------------------ATG------------------------------TAA---------------------------------------ATGTAA------------------------------------------------ATG------ATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG
                                                                   ORF                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   [ open reading frame                                                                                                                                                                                                                ...
  5   1   2       bld Egg1                            IMAGE:3301509.5p GCACGAGGTTTAAGTTTCAAAGATTAATGTAAGAACTGTACAAGGGTTCTTGCTTTTTCCCTGCAGTCAGCAATGTGACTCTATTGCTCAGGTACATTATTGATTTTATCATTTGCAAGCTGAACACTTAGACGTATTATAGGCTTTTTCCTTTTAACTCCTTGAAAATGTGAATGGCTTTTGGCACACTTACTAAACTGTGCTTTTCAGGTCATCCAGAATAACGGACGTTAAAATGAAATTCTTTGCCAGGCTTCACTTTCCCTTCTGCCCATTCATTCCAGACATCTCAGGTATGATGAGTTCTAGCAGTCTCATTTGTATGTTAAGTTTTGCATTGTAAAAGGGACCTTGAGATGGTCAAAAAGGATGTTTAGACATTTCTATGAAGCTTTCATGGCTTTTTCACCATTTCACGTAATCTGTATTTGCCAACATTCCTTTTAGGCATAGTTCACTAATGTAACTGTGTTACAATGGGA
  5   1   2      seed Egg1                               PBX0165G04.5p                                                                                                                                                                                                                                ACGGACGTTAAAATGAAATTCTTTGCCAGGCTTCACTTTCCCTTCTGCCCATTCATTCCAGACATCTCAGGTATGATGAGTTCTAGCAGTCTCATTTGTATGTTAAGTTTTGCATTGTAAAAGGGACCTTGAGATGGTCAAAAAGGATGTTTAGACATTTCTATGAAGCTTTCATGGCTTTTTCACCATTTCACGTAATCTGTATTTGCCAACATTCCTTTTAGGCATAGTTCACTAATGTAACTGTGTTACAATGGGaaaaaaaaTCTCTGTGTAAAGATCGAAGGGGTAATGAGCCATATGTGTGCTACATTATACCCTGTTGTTGACCAAAGAAGCAGTAGGATAGAGCTAACTGGGATTGTCTGGCGAACGCTGAGTATTATAATTGCAGAGGTCTATTACACATCTTGTATTGCTCTTTTATATGGATATATTTTATGTAAAGCATTACTGTTTATTAAAATCTCTGCAAGGACCATTTCTAATATGAGTTATTCTAGTTTGCACACAGCAACAGGTAG
  5   1   2       bld Egg1                               PBX0080D01.5p                                                                                                                                                                                                                                                             GCTTCACTTTCCCTTCTGCCCATTCATTCCAGACATCTCAGGTATGATGAGTTCTAGCAGTCTCATTTGTATGTTAAGTTTTGCATTGTAAAAGGGACCTTGAGATGGTCAAAAAGGATGTTTAGACATTTCTATGAAGCTTTCATGGCTTTTTCACCATTTCACGTAATCTGTATTTGCCAACATTCCTTTTAGGCATAGTTCACTAATGTAACTGTGTTACAATGGGaaaaaaaaTCTCTGTGTAAAGATCGAAGGGGTAATGAGCCATATGTGTGCTACATTATACCCTGTTGTTGACCAAAGAAG

In case of problems mail me! (mike.gilchrist@crick.ac.uk)