Gurdon Institute Xenopus laevis EST Database
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Application in use by Guest User - 08 Aug 2022 - database INFO-PUBLIC
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By Clone or Sequence Name
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Related Clusters
CS% VC Transcript Size Type Links % In % Out Identified Blast Description.
1 2.0 0Xl3.1-IMAGE:4963943-IMAGp.5 5 END 1 20 20 ELK3, member of ETS oncogene family [Xenopus laevis]
This cluster: approximate FL confidence score = 66%
1012795859 Xl3.1-Lens-K136.5 - 5 ESTs
...-70.......-60.......-50.......-40.......-30.......-20.......-10.......0.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690
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Xl3.1-Lens-K136.5 CAGGTTGGCTCTATGTATTAATTGTAACAGAGCATGTGATATACAGTAGGTTTTGTATATGCAAAGTGTTGAGCACTGTTGAATTCCATTTCTCCAGTTGACACTGTGGGCTAGTTATACTAAACCCTGTAAGGCTTATACTTGGGGATGGAAGCCAGATTGCAAAACCCCCAAAAAGCTGATCATTTAAGTAGTGATCATTGCACAGCTCAGCATAGTCTAGTTGTGCCAGTAGTATCCCTGGACAAGCCAATGTTTGCCTTATGTTATGCACTTGAGCTTATGGAAACTATAACCGTCTGTGCCTTCTCTTGCATACTACATTTTTGTGTATTTTACATTATGGATAACACTTCTGGGGAAGTAACCTGTATTAGGGCAATAAAAAGAAAAGTGTCATATTTTGGTGATAAACCCCCCCAAAAAAAAACAACCAAAATTGTAATCACTTAGCGTCCGATTTTCATTTTTTGCCCTATAACTACACCCCCCCCCACTTTAGATTGACATGACCTCTCTTTCTTAGAATTCTAAGCCCGAGTTCCCAAACTTATATTCCAGACTTATTTGTATTTAGTGCTTTTCATTTTTATTGAAATATGGCCTGAAATGTTTTTTCTTAATTTGTTGAGAAAAAAAAAAATAAAA
Xl3.1-CHK-1012705160 GGCTCTATGTATTAATTGTAACAGAGCATGTGATATACAGTAGGTTTTGTATATGCAAAGTGTTGAGCACTGTTGAATTCCATTTCTCCAGTTGACACTGTGGGCTAGTTATACTAAACCCTGTAAGGCTTATACTTGGGGATGGAAGCCAGATTGCAAAACCCCCAAAAAGCTGATCATTTAAGTAGTGATCATTGCACAGCTCAGCATAGTCTAGTTGTGCCAGTAGTATCCCTGGACAAGCCAATGTTTGCCTTATGTTATGCACTTGAGCTTATGGAAACTATAACCGTCTGTGCCTTCTCTTGCATACTACATTTTTGTGTATTTTACATTATGGATAACACTTCTGGGGAAGTAACCTGTATTAGGGCAATAAAAAGAAAAGTGTCATATTTTGGTGATAAACCCCCCCAAAAAAAAACAACCAAAATTGTAATCACTTAGCGTCCGATTTTCATTTTTTGCCCTATAACTACACCCCCCCCCACTTTAGATTGACATGACCTCTCTTTCTTAGAATTCTAAGCCCGAGTTCCCAAACTTATATTCCAGACTTATTTGTATTTAGTGCTTTTCATTTTTATTGAAATATGGCCTGAAATGTTTTTTCTTAATTTGTTGAGAAAAAAAAAAATAAAAAAAAAT
consensus depths 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 4 4 4 5 4 5 4 5 4 5 4 5 4 5 4 5 4 5 4 5 4 5 4 5 4 5 4 5 4 5 4 5 4 5 4 5 4 5 4 5 4 5 3 4 3 4 2 4 2 4 2 4 2 4 2 4 3 4 3 4 4 4 4 4 4 4 4 4 3 4 3 4 3 4 2 4 2 4 2 4 3 4
ORF LNG 147 4
Xl3.1-Lens-K136.5 ATG---TAA---TAA------ATGTGA------------------------------TGA---------------------------------------TAG------TAA------TAA---------------ATG------------------------------------------------------------------------------------------------------ATG---------------------------ATG---------------------------------------------------------ATG---------------------------------------------------------------------------------------------------------TAG---------------------------------------------------TGA------------------------TAA---------------------------------------------------------------------------ATG
ORF [ open reading frame ]
5 1 2 seed Lens 5x3 Lens-K136.5p ACACTCCCAGCATGCTCCTCCGTTAGATATGAATTGCTTTAAACTGTAGTTTAAAGGCTACTCCTTAGAACCACAGGTTGGCTCTATGTATTAATTGTAACAGAGCATGTGATATACAGTAGGTTTTGTATATGCAAAGTGTTGAGCACTGTTGAATTCCATTTCTCCAGTTGACACTGTGGGCTAGTTATACTAAACCCTGTAAGGCTTATACTTGGGGATGGAAGCCAGATTGCAAAACCCCCAAAAAGCTGATCATTTAAGTAGTGATCATTGCACAGCTCAGCATAGTCTAGTTGTGCCAGTAGTATCCCTGGACAAGCCAATGTTTGCCTTATGTTATGCACTTGAGCTTATGGAAACTATAACCGTCTGTGCCTTCTCTTGCATACTACATTTTTGTGTATTTTACATTATGGATAACACTTCTGGGGAAGTAACCTGTATTAGGGCAATAAAAAGAAAAGTGTCATATTTTGGTGATAAACCCCCCCaaaaaaaaaCAACCAAAATTGTAATCACTTAGCGTCCGATTTTCATTTTTTGCCCTATAACTACAcccccccccACTTTAGATTGACATGACCTCTCTTTCTTAGAATTCTAAGCCCGAGTTCCCAAACTTATATTCCAGACTTATTTGTATTTAGTGCTTTTCATTTTTATTGAAATATGGCCTGAAATGTTTTTTCTTAATTTGTTGAGaaaaaaaaaaataaaaaaaaatgtcacaacaaaaaaaaaaaaaaa
5 1 1 add Lens 5x3 Lens-R323.5p ACACTCCCAGCATGCTCCCCTTTTAGNNATGAATTGCTTTAAACTGTAGTTTAAAGGCTNCTNNGAGAACCACAGGTTGGCTCTATGTATTAATTGTAACAGAGCATGTGATATACAGTAGGTTTTGTATATGCAAAGTGTTGAGCACTGTTGAATTCCATTTCTCCAGTTGACACTGTGGGCTAGTTATACTAAACCCTGTAAGGCTTATACTTGGGGATGGAAGCCAGATTGCAAAACCCCCAAAAAGCTGATCATTTAAGTAGTGATCATTGCACAGCTCAGCATAGTCTAGTTGTGCCAGTAGTATCCCTGGACAAGCCAATGTTTGCCTTATGTTATGCACTTGAGCTTATGGAAACTATAACCGTCTGTGCCTTCTCTTGCATACTACATTTTTGTGTATTTTACATTATGGATAACACTTCTGGGGAAGTAACCTGTATTAGGGCAATAAAAAGAAAAGTGTCATATTTTGGTGATAAACCCCCCCaaaaaaaaaCAACCAAAATTGTAATCACTTAGCGTCCGATTTTCATTTTTTGCCCTATAACTACAcccccccccACTTTAGATTGACATGACCTCTCTTTCTTAGAATTCTAAGCCCGAGTTCCCAAACTTATATTCCAGACTTATTTGGTATTTAGNGCTTTTCATTTTTATTGNAAATATGGGCCTGGAAATGNTTTTTTCCTTAATTTTGTTGGAGaaaaaaaaaaaaataaaaaaaaaaatgncccccaccaaaaaaaaaaaaaaaaa
3 1 1 add Tbd7 XL070g15.3p ATGAATTGCTTTAAACTGTAGTTTAAAGGCTANTAGGAGAACCACAGGTTGGCTNTATGTATTAATTGTAACAGAGCATGTGATATACAGTAGGTTTTGTATATGCAAAGTGTTGAGCACTGTTGAATTCCATTTCTCCAGTTGACACTGTGGGCTAGTTATACTAAACCCTGTAAGGCTTATACTTGGGGATGGAAGCCAGATTGCAAAACCCCCAAAAAGCTGATCATTTAAGTAGTGATCATTGCACAGCTCAGCATAGTCTAGTTGTGCCAGTAGTATCCCTGGACAAGCCAATGTTTGCCTTATGTTATGCACTTGAGCTTATGGAAACTATAACCGTNTGTGCCTTNTCTTGCATACTACATTTTTGTGTATTTTACATTATGGATAACACTTNTGGGGAAGTAACCTGTATTAGGGCAATAAAAAGAAGAAAGTCATATTTTTnTTTTTT
3 1 2 bld Sp1 5g3 out IMAGE:4963943.3p AGCCAGATTGCAAAACCCCCAAAAAGCTGATCATTTAAGTAGTGATCATTGCACAGCTCAGCATAATCTAGTTGTGCCAGTAGTATCCCTGGACAAGCCAATGTTTGCCTTATGTTATGCACTTGAGCTTATGGAAACTATAACCGTCTGTGCCTTCTCTTGCATACTACATTTTTGTGTATTTTACATTATGGATAACACTTCTGGGGAAGTAACCTGTATTAGGGCAATAAAAAGAAAAGTGTCATATTTTGGTGAGAGGCCCCCCCAAAAAAAACAACCAAAATTGTAATCACTTAGCGTCCGATTTTCATTTTTTGCCCTATAACTACATCCCCCCCCCACTTTAGATTGACATGACCTCTCTTTCTTAGAATTCTAAGCCCGAGTTCCCAAACTTATATTCCAGACTTATTTGTATTTAGTGCTTTTCATTTTTATTGAAATATGGCCTGAAACGTTTTTTCTTAATTTGTTGAGAAAAAAAAAAATAAAAAAAAATTCTCT
3 1 1 add Sp1 IMAGE:4173690.3p TCTAGCAGGTTTCATTTATTTGCCCATCAGTAACCTTGACCTTCTCTAGATGATCTGGTCTCCTTCAGCTTGAGAGCGACCAGTTACCATTCTTTGCCTTATGTTATGCACTTGAGCTTATGGAAACTATAACCAGCTGTGCCTTTTCTTGCATACTAAGTTGTACATTTTTGTGTATTTTACATTGTGGAGAACACTTATGCGGACGTATTAAAAGAAGAAAGTGAGATTATTGCAATTGCAACATTTTCACTTATTTTCCACAAAAGTATTGGTGATAAATAAATTTGCAATCAAGGATCTGCTTTTCATGTTTTGGCCTATTACTACATTCCCCCCCTATAGACAGAGTTACCTCTTTCTTAGAATTTGAAGCCTGAATACCCAAACATATATTCCAGCCTTATTTGTATTTAGTGCTTTTCATTTTTATTAAAAATATGGCCTTAAAGATTTTTTTTTTATTTTGTTGAGGAAAAAAAAATAAAATAAATGGCACACCA
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