Gurdon Institute Xenopus laevis EST Database
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Application in use by Guest User - 09 Mar 2021 - database INFO-PUBLIC
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By Clone or Sequence Name
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Related Clusters
CS% VC Transcript Size Type Links % In % Out Identified Blast Description.
1 1.5 0Xl3.1-IMAGE:3581609.5 6 END 2 66 33 XFD-11 protein [Xenopus laevis]
CS% VC Transcript Size Type Percent From To Identified Blast Description.
2 0.0 0Xl3.1-XL093l08.3 6 PI 89 122 960 hypothetical protein LOC734912 [Xenopus laevis]
This cluster: approximate FL confidence score = 0%
1012796678 Xl3.1-IMAGE:5514684.5 - 3 ESTs
-1000.....-990......-980......-970......-960......-950......-940......-930......-920......-910......-900......-890......-880......-870......-860......-850......-840......-830......-820......-810......-800......-790......-780......-770......-760......-750......-740......-730......-720......-710......-700......-690......-680......-670......-660......-650......-640......-630......-620......-610......-600......-590......-580......-570......-560......-550......-540......-530......-520......-510......-500......-490......-480......-470......-460......-450......-440......-430......-420......-410......-400......-390......-380......-370......-360......-350......-340......-330......-320......-310......-300......-290......-280......-270......-260......-250......-240......-230......-220......-210......-200......-190......-180......-170......-160......-150......-140......-130......-120......-110......-100......-90.......-80.......-70.......-60.......-50.......-40.......-30.......-20.......-10.......0.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760.......770.......780.......790.......800.......810.......820.......830.......840.......850.......860.......870.......880.......890.......900.......910.......920.......930.......940.......950.......960.......970.......980....
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Xl3.1-IMAGE:5514684.5 CCAGGGCTCCCTCTACAGCTCCCCCTGCAGTCAGGGCACAAGCAGTGGCGGTGGGGCAGGGACCTATCACTGTAATATGCAGGCCATGAGCTTGTAATTCTGGGGACAGTCGGGACACTTAACTCCTGCCAAACACCCCAGCAGCACCACAGTGGAAAGAGACCTTACCTGACTATTCCACTCTACCACCTCTGCCCAGAGCCATGGCAACCAGGAGCACCCTCACCAGGGCCGATTGCCCCTCTTGGTATCTCAATCAAACTGGGAATTGGGCCACTTGGCCGGGGCCACCTACCCGGGGCAGCAGCAGAACTTCCACTCGGTGCGAGAGATGTTTGAGTCGCAGCGATTAGCTTTGAACAGTTCCCCTGTGAATGGAAATAGCAGCTGTCAGATGTCTTTCCCCCCCAGCCAGTCCTTGTATCGCACCTCGGGGGCGTTTGTCTATGACTGCAGCAAATTCTGACCAAAACGCTGAAAACAGCTTTCCAAAATATTTTTTTTTATAATTTTTATCTAATAGGGATTTTTTAAGAAAGGAAAAAGAACATCCTCCTCATCCAAAAATGTCCTATTTGTTAGTTTTGTACAGACAACAAAATTGTCTTGGTTTGTTAAAAATGGGACAGTGTTAAACTCGGAAAATAACACGTAAGTTCCTTCTGATTGTGATGCATGGCAATCTCGTAAGGTATTATTTCCCTGTGTTTAAGAGCGTATATTATATATATATATATATATGACAAGCTTCCATAGACTTGTTCTCAGATGTAAATTGCAATATAGTAATTTATTTAAAGAAAAAAATTAATGTACCTGGATTGTGTGGACCAAAAAAACGCCAGGCAGTGGCGATCAGAACACTTATGTGTCACAACATTGGCGTTTTCATAACAAAATAATTAAGGGATTTTGTATCCAAACTATTTTATCTATCAATTTTGTTTTCTTGTTTTGAAA
Xl3.1-CHK-1012712683 CTCCCTCTACAGCTCCCCCTGCAGTCAGGGCACAAGCAGTGGCGGTGGGGCAGGGACCTATCACTGTAATATGCAGGCCATGAGxxTxxxATTCTGGGxxxxGTCGGGACACTTAACTCCTGCCAAxxxCCCCAGCAGCxxCxxAGTGGAAxxxxxCCTTACCTGACTxTxCxxCTCTACCxxCxxxxxCCxGAGCCATGGCAACCAGGAGCACCCTCACCAGGGCCGxxTxxCCCTCTTGGTATCTCAATCAAxxxGGGAATTTGGCCACTTGGCCGGGGCCACCTACCCGGGGCAGCAGCAGAACTTCCACTCGGTGCGAGAGATGTTTGAGTCGCAGCGATTAGCTTTGAACAGTTCCCCTGTGAATGGAAATAGCAGCTGTCAGATGTCTTTCCCCCCCAGCCAGTCCTTGTATCGCACCTCGGGGGCGTTTGTCTATGACTGCAGCAAATTCTGACCAAAACGCTGAAAACAGCTTTCCAAAATATTTTTTTTTATAATTTTTATCTAATAGGGATTTTTTAAGAAAGGAAAAAGAACATCCTCCTCATCCAAAAATGTCCTATTTGTTAGTTTTGTACAGACAACAAAATTGTCTTGGTTTGTTAAAAATGGGACAGTGTTAAACTCGGAAAATAACACGTAAGTTCCTTCTGATTGTGATGCATGGCAATCTCGTAAGGTATTATTTCCCTGTGTTTAAGAGCGTATATTATATATATATATATATATGACAAGCTTCCATAGACTTGTTCTCAGATGTAAATTGCAATATAGTAATTTATTTAAAGAAAAAAATTAATGTACCTGGATTGTGTGGACCAAAAAAACGCCAGGCAGTGGCGATCAGAACACTTATGTGTCACAACATTGGCGTTTTCATAACAAAATAATTAAGGGATTTTGTATCCAAACTATTTTATCTATCAATTTTGTTTTCTTGTTTTGAAAATNTCT
consensus depths 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 3 3 3 3 3 2 3 2 3 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1
PROTEIN --- Gg ---- 6e-013 NP_990469.1 winged helix transcriptional factor MFH-1 [Gallus gallus] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------==============================================================================================================================================================================================================================================================================================================================================================================================================================================================================
PREDICTED - ?? ---- 3e-014 XP_872296.3 PREDICTED: similar to forkhead box C2 [Bos taurus] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------==================================================================================================================================================================================================================================================================================================================================================================================================================================================================
PREDICTED - Cf ---- 2e-016 XP_546791.2 PREDICTED: similar to Forkhead box protein C2 (Forkhead-related protein FKHL14) (Mesenchyme fork head protein 1) (MFH-1 protein) (Transcription factor FKH-14) isoform 1 [Canis familiaris] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------==================================================================================================================================================================================================================================================================================================================================================================================================================================================================
...PROTEIN --- Mm ---- 1e-041 NP_032618.2 forkhead box C1; mesoderm/mesenchyme forkhead 1; congenital hydrocephalus [Musmusculus] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------==============================================================================================================================================================================================================================================================================================================================================================================================================================================================================
...PROTEIN --- Hs ---- 1e-041 NP_001444.2 forkhead box C1 [Homo sapiens] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------==============================================================================================================================================================================================================================================================================================================================================================================================================================================================================
PREDICTED - Dr ---- 9e-046 XP_001918817.1 PREDICTED: hypothetical protein [Danio rerio] ----------------------------------------------------------------------------------------------------------------------------------==============================================================================================================================================================================================================================================================================================================================================================================================================================================================================
...PROTEIN --- Xt ---- 1e-065 NP_001007864.1 foxc1-prov protein [Xenopus tropicalis] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------==============================================================================================================================================================================================================================================================================================================================================================================================================================================================================
...PROTEIN --- Xl ---- 1e-069 NP_001080937.1 winged helix transcription factor XFD-11 [Xenopus laevis] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------==============================================================================================================================================================================================================================================================================================================================================================================================================================================================================
Xl3.1-IMAGE:5514684.5 ATG------ATG---------------------------------------------------------------------------------TGA---------------------------------------------------------------------------------------------------------------------------------------------------------------ATG------------------------------------------------------------ATG------------------------------------------------------------------TGA---------TGA---------------------------------------TAATAG---------------------------------------------------------------------------------------------------------------------------------TAA------------------------------------------------------TAA---------------------------ATG------------------------------------------------------------------TAA------------------------------------------------------------------------------------------------------------------------------------------------TGA
ORF ... open reading frame ]
3 1 2 seed Ga18 out xlk157d23ex.3p TNNANNACAnnnnnnnnnCCCnnnnTnnnCCCTnnCCTnCnCCCnnnnnnANGNCTCCNTCTACANNTCCCCCTGNAGNNNNGNNACAAGNAGTGGNNNTGGNGNNAGGGNCCTATNACTGTAATATNCAGGCCATGNGCTTGTATTCTGGGGACAGNTCGGNCCACTTAACNCCTNNCAACACCCCAGCAGCCACCACAGNGGAAGAGACCTTACCTGACTATTCCATCTCTNCCACCTCTGCCCAGNNNCATGGCANCCAGGAGNACCCTCACCAGGNCCGATTGCCCTCTTGGTATCTCAATCAAACTGNGGAATTGGCCACTTGGCCGGGNCCACCTACCCGGGGCAGCAGCAGAACTTCCACTCGGTGCGAGAGATGTTTGAGTCGCAGCGATTAGCTTTGAACAGTTCCCCTGTGAATGGAAATAGCAGCTGTCAGATGTCTTTCCCCCCCAGCCAGTCCTTGTATCGCACCTCGGGGGCGTTTGTCTATGACTGCAGCAAATTCTGACCAAAACGCTGAAAACAGCTTTCCAAAATATTTTTTTTTATnnTTTTTATCTAATAGGGATTTTTTAAGAAAGGAAAAAGAACATCCTCCTCATCCAAAAATGTCCTATTTGTTAGTTTTGTACAGACAACAAAATTGTCTTGGTTTGTTAAAAATGGGACAGTGTTAAACTCGGAAAATAACACGTAAGTTCCTTCTGATTGTGATGCATGGCAATCTCGTAAGGTATTATTTCCCTGTGTTTAAGAGCGTATATTATATATATATATATATATGACAAGCTTCCATAGACTTGTTCTCAGATGTAAATTGCAATATAGTAATTTATTTAAAGAAAAAAATTAATGTACCTGGATTGTGTGGACCAAAAAAACNCCAGGCAGTGGCGATCAGAACACTTATGTGTCACAACATTGGCGTTTTCATAACAAAATAATTAAGGGATTTTGTATCCAAACTATTTTATCTATCAATTTTGTTTTCTTGTTTTGAAAATNTCTCGANNNNNCANNNCCGTTTNT
5 1 1 add Emb4 IMAGE:5514684.5p CCAGGCCAGGGCTCCCTCTACAGCTCCCCCTGCAGTCAGGGCACAAGCAGTGGCGGTGGGGCAGGGACCTATCACTGTAATATGCAGGCCATGAGCTTGTATTCTGGGGACAGGTCGGGACACTTAACTCCTGCCAACACCCCAGCAGCCACCACAGTGGAAGAGACCTTACCTGACTATTCCATCTCTACCACCTCTGCCCAGAGCCATGGCAACCAGGAGCACCCTCACCAGGGCCGATTGCCCTCTTGGTATCTCAATCAAACTGGGGAATTGGGCCACTTGGCCGGGGCCACCTACCCGGGGCAGCAGCAGAACTTCCACTCGGTGCGAGAGATGTTTGAGTCGCAGCGATTAGCTTTGAACAGTTCCCCTGTGAATGGAAATAGCAGCTGTCAGATGTCTTTCCCCCCCAGCCAGTCCTTGTATCGCACCTCGGGGGCGTTTGTCTATGACTGCAGCAAATTCTGACCAAAACGCTGAAAACAGCTTTCCAAAATAtttttttttataatttttatctaatagggattttttAAGAAAGGAAAAAGAACATCCTCCTCATCCAAAAATGTCCTATTTGTTAGTTTTGTACAGACAACAAAATTGTCTTGGTTTGTTAAAAATGGGACAGTGTTAAACTCGGAAAATAACACGTAAGTTCCTTCTGATTGTGATGCATGGCAATCTCGTAAGGTATTATTTTCCCTGTGTTAAGAGCGtatattatatatatatatatatatatGAACAGCTTCCATAGACTTTGTCTCAGATGTAAANTTGCATATAGA
3 1 2 bld Tbd7 out XL062l24.3p AGCTTTCCAAAATATTTTTTTTTATAATTTTTATCTAATAGGGATTTTTTAAGAAAGGAAAAAGAACATCCTCCTCATCCAAAAATGTCCTATTTGTTAGTTTTGTACAGACAACAAAATTGTCTTGGTTTGTTAAAAATGGGACAGTGTTAAACTCGGAAAATAACACGTAAGTTCCTTCTGATTGTGATGCATGGCAATCTCGTAAGGTATTATTTCCCTGTGTTTAAGAGCGTATATTATATATATATATATATATGACAAGATTCCATAGACTTGTTCTCAGATGTAAATTGCAATATAGTAATTTATTTAAAGAAAAAAATTAATGTACCTGGATTGTGTGGACCAAAAAAACGCCAGGCAGTGGCGATCAGAACACTTATGTGTCACAACATTGGCGTTTTCATAACAAAATAATTAAGGGATTTTGTATCCAAACTATTTTATCTATCAATTTTGTTTTCT
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