Gurdon Institute Xenopus laevis EST Database
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Application in use by Guest User - 04 Mar 2021 - database INFO-PUBLIC
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By Clone or Sequence Name
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Related Clusters
(none)
This cluster: approximate FL confidence score = 67%
1012797334 Xl3.1-IMAGE:8075066.5 - 3 ESTs
0.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760
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Xl3.1-IMAGE:8075066.5 CCCACGCGTCCGGGAGTATTGACCTACTAACACAGATGTGTAGAGCAGCAGGCTGCAGACTGGAGCGGGGAGAGACTGATATTCACACACGTATACACACACATAGGAGGCACCGCTTCACACTCCCAACGTTGTGATTTTTGTTTTATTCTCTGCTTGCCTGGAAAGGAGCAAGTGAAGTCCTTTTACGTTAAAAAGGAGCAAAAACGGATGCAAGCGCTAATGCAGGTCAAATTATTGTTCCTGAGCATAAAACGGAAATGGTTACAACCTGGCTGTCATGAGGCCATGAAGGAAATTTCGCCAGCAGATGGAATTTAATCTAATTACGAGCATCAAGTTGACGTGAAATTGCTCTTTTTTAGGAGCTGCGGAAGGTTTCTAACTCCACTTCCTTCTCATGCAGCTGAGAAAAAATGCCAACAATTAAAAAAGAGCAAGAATGTGCAGATTCACGTATGGAAAATATTCTTGTTCTTAGTTCAAATATACCAGACATGTCAGAATCCATGGACTCCAGTAATGATATGTTGTACAGCGACGGGCTACCAGTAAAAAACAAAAGCTCCTCATGTCGGAGAAAAAGGGAATTCATCCCAGATGAAAAGAAAGATGCTATGTATTGGGAAAAAAGACGGAAAACAATGAAGCTGCAAAAAGGTCTAGAGAAAAACGGAAGGTTAATGACATGGTTTTGGAAAATAATTTCATGCACTAGGAGAGAAGAATGCAGTCTGAAAACAGACTGCTGTCATT
Xl3.1-CHK-1012713215 CGTCCGGGAGTATTGACCTACTAACACAGATGTGTAGAGCAGCAGGCTGCAGACTGGAGCGGGGAGAGACTGATATTCACACACGTATACACACACATAGGAGGCACCGCTTCACACTCCCAACGTTGTGATTTTTGTTTTATTCTCTGCTTGCCTGGAAAGGAGCAAGTGAAGTCCTTTTACGTTAAAAAGGAGCAAAAACGGATGCAAGCGCTAATGCAGGTCAAATTATTGTTCCTGAGCATAAAACGGAAATGGTTACAACCTGGCTGTCATGAGGCCATGAAGGAAATTTCGCCAGCAGATGGAATTTAATCTAATTACGAGCATCAAGTTGACGTGAAATTGCTCTTTTTTAGGAGCTGCGGAAGGTTTCTAACTCCACTTCCTTCTCATGCAGCTGAGAAAAAATGCCAACAATTAAAAAAGAGCAAGAATGTGCAGATTCACGTATGGAAAATATTCTTGTTCTTAGTTCAAATATACCAGACATGTCAGAATCCATGGACTCCAGTAATGATATGTTGTACAGCGACGGGCTACCAGTAAAAAACAAAAGCTCCTCATGTCGGAGAAAAAGGGAATTCATCCCAGATGAAAAGAAAGATGCTATGTATTGGGAAAAAAGACGGAAAACAATGAAGCTGCAAAAAGGTCTAGAGAAAAACGGAAGGTTAATGACATGGTTTTGGAAAATAATTTxxTGCACTAGGAGAxxAGAATGCAGTCTGAAAACAGACTGCTGTCATTAAACTT
consensus depths 1 1 1 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 2 3 2 3 2 3 2 3 2 3 2 3 2 3 2 3 2 3 2 3 2 3 2 3 2 3 2 3 2 3 2 3 1 3 1 3 1 3 1 3 1 3 1 3 2 3 2 3 2 3 2 3 2 3 2 3 2 3 1 3 1 1 1 1
BLH ATG 260 19
BLH MIN 413 20
BLH MPR 401 20
BLH OVR 416 160
CDS MIN 416 20
ORF LNG 416 1
PROTEIN === Dr ==== 1e-011 NP_001004120.1 zgc:100867 [Danio rerio] ====================================================================================================================================================================================================
PREDICTED - Cf ==== 1e-018 XP_533548.2 PREDICTED: similar to nuclear factor, interleukin 3 regulated [Canis familiaris] ==============================================================================================================================================================
PREDICTED - Mm ==== 7e-019 XP_001475867.1 PREDICTED: similar to NFIL3/E4BP4 transcription factor [Mus musculus] ======================================================================================================================================================================
PROTEIN --- Gg ==== 3e-019 NP_989949.1 nuclear factor, interleukin 3 regulated [Gallus gallus] =======================================================================================================================================================================================
PROTEIN --- Bt ==== 3e-019 NP_001068708.1 nuclear factor, interleukin 3 regulated [Bos taurus] =======================================================================================================================================================================================
PROTEIN --- Hs ==== 9e-020 NP_005375.2 nuclear factor, interleukin 3 regulated [Homo sapiens] ========================================================================================================================================================================================
PROTEIN --- Xt ==== 4e-036 Q5FW38.1 Nuclear factor interleukin-3-regulated protein [Xenopus tropicalis] ============================================================================================================================================================================================================================================
PROTEIN === Xl ==== 3e-039 NP_001087679.1 MGC82043 protein [Xenopus laevis] ==========================================================================================================================================================================================================================================================
Xl3.1-IMAGE:8075066.5 ATG------------------------------------------------------------------------------------------------TGA------------------------------------------------------TAA------------------------------------------------------------------ATG------------------TGA---------------------------------------TAA---------------TGA------------------TAG------------------------------------------TGA------ATG---------------------------------------ATG------------------------------------ATG---------ATG---------------ATG---------------------------------------------------------------------------------------ATG------------------------ATG------------------------------------ATG
ORF [ open reading frame ...
5 1 2 bld Kid 5g IMAGE:7011102.5p CCCACGCGTCCGGGAGTATTGACCTACTAACACAGATGTGTAGAGCAGCAGGCTGCAGACTGGAGCGGGGAGAGACTGATATTCACACACGTATACACACACATAGGAGGCACCGCTTCACACTCCCAACGTTGTGATTTTTGTTTTATTCTCTGCTTGCCTGGAAAGGAGCAAGTGAAGTCCTTTTACGTTAAAAAGGAGCAAAAACGGATGCAAGCGCTAATGCAGGTCAAATTATTGTTCCTGAGCATAAAACGGAAATGGTTACAACCTGGCTGTCATGAGGCCATGAAGGAAATTTCGCCAGCAGATGGAATTTAATCTAATTACGAGCATCAAGTTGACGTGAAATTGCTCTTTTTTTAGGAGCTGCGGAAGGTTTCTAACTCCACTTCCTTCTCATGCAGCTGAGAAAAAATGCCAACAATTAAAAAAGAGCAAGAATGTGCAGATTCACGTATGGAAAATATTCTTGTTCTTAGTTCAAATATACCAGACATGTCAGAATCCATGGACTCCAGTAATGATATGTTGTACAGCGACGGGCTACCAGTAAAAAACAAAAGCTCCTCATGTCGGAGAAAAAGGGAATTCATCCCAGATGAAAAGAAAGATGCTATGTATTGGGAAAAAAGACGGANAAACAATGAAGCTGCAAAAAGGTCTAGAGAANAACGGAGGTTAAATGACATGGTTTTGGAAAATAACTTATTGCACTAGGAGAGGAGAATGCCAGTCTT
5 1 1 add FaBN 5g IMAGE:8075066.5p GATTCCCGGGATTGACCTACTAACACAGATGTGTAGAGCAGCAGGCTGCAGACTGGAGCGGGGAGAGACTGATATTCACACACGTATACACACACATAGGAGGCACCGCTTCACACTCCCAACGTTGTGATTTTTGTTTTATTCTCTGCTTGCCTGGAAAGGAGCAAGTGAAGTCTTTTTACGTTAAAAAGGAGCAAAAACGGATGCAAGCGCTAATGCAGGTCAAATTATTGTTCCTGAGCATATAACGGAAATGGTTACAACCTGGCTGTCATGAGGCCATGAAGGAAATTTCGCCAGCAGATGGAATTTAATCTAATTACCAGCATCAAGTTGACGTGAAATTGCTCTTTTTTAGGAGCTGCGGAAGGTTTCTAACTCCACTTCCTTCTCATGCAGCTGAGAAAAAATGCCAACAATTAAAAAAGAGCAAGAATGTGCAGATTCACGTATGGAAAATATTCTTGTTCTTAGTTCAAATATACCAGACATGTCAGAATCCATGGACTCCAGTAATGATATGTTGTACAGCGACGGGCTACCAGTAAAAACAAAAGCTCCTCATGTCAGAGGAAAAGGGAATTCATCCCAGATGAAAAGAAAGATGCTATGTATTGTgaaaaaagaccgaaaaacaatgaagctgcaaaagcgtctagagaaaaaCGGAAGTTAAATGACATGGTTTTGGAAATAAACTTCATGCACTAGGAGAAGAGATTGCCAGTCTGAAAC
5 1 2 seed Ov1 5g IMAGE:8332598.5p CCTACTAACACAGATGTGTAGAGCAGCAGGCTGCAGACTGGAGCGGGGAGAGACTGATATTCACACACGTATACACACACATAGGAGGCACCGCTTCACACTCCCAACGTTGTGATTTTTGTTTTATTCTCTGCTTGCCTGGAAAGGAGCAAGTGAAGTCCTTTTACGTTAAAAAGGAGCAAAAACGGATGCAAGCGCTAATGCAGGTCAAATTATTGTTCCTGAGCATAAAACGGAAATGGTTACAACCTGGCTGTCATGAGGCCATGAAGGAAATTTCGCCAGCAGATGGAATTTAATCTAATTACGAGCATCAAGTTGACGTGAAATTGCTCTTTTTTAGGAGTTGCGGAAGGTTTCTAACTCCACTTCCTTCTCATGCAGCTGAGAAAAAATGCCAACAATTAAAAAAGAGCAAGAATGTGCAGATTCACGTATGGAAAATATTCTTGTTCTTAGTTCAAATATACCAGACATGTCAGAATCCATGGACTCCAGTAATGATATGTTGTACAGCGACGGGCTACCAGTAAAAAACAAAAGCTCCTCATGTCGGAGAAAAAGGGAATTCATCCCagatgaaaagaaagatgctatgtattgggaaaaaagacggaaaacaatgaagctgcaaaaagGTCTAGAGAAAAACGGAAGGTTAATGACATGGTTTTGGAAAATAATTTATTGCACTANGAGAGAAGAATGCAGTCTGAAAACAGACTGCTGTCATTAAACTT
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