Gurdon Institute Xenopus laevis EST Database
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Application in use by Guest User - 11 Apr 2021 - database INFO-PUBLIC
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By Clone or Sequence Name
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Related Clusters
CS% VC Transcript Size Type Links % In % Out Identified Blast Description.
1 2.0 0Xl3.1-PBX0069E08.5 4 END 1 50 25 hypothetical protein LOC431965 [Xenopus laevis]
CS% VC Transcript Size Type Percent From To Identified Blast Description.
2 0.0 0Xl3.1-IMAGE:6640105.5 5 PI 91 486 756 (no blast hit)
This cluster: approximate FL confidence score = 49%
1012800917 Xl3.1-IMAGE:5048938.5 - 2 ESTs
..-300......-290......-280......-270......-260......-250......-240......-230......-220......-210......-200......-190......-180......-170......-160......-150......-140......-130......-120......-110......-100......-90.......-80.......-70.......-60.......-50.......-40.......-30.......-20.......-10.......0.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760.
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Xl3.1-IMAGE:5048938.5 TTCTATTTCTGTTACTGCTTCAGCTGCTGCCACTCTTCACCTCAATCACAAACAAACAAAACAGGGTTCGCTGGTCGGAGGAGTGGGTAGGATACATGGCTGCCAGAGCGTCCCTTCCAGCTTCCGGCCCTGTGTGTTGCTCGCACTGAGCGACTGGCACAACTTTACAGCAGGAACCTGTAAGTACCAGGCTGAGTGGCCGCCTTCCTTTGAGCTGTAGTCTTTGTACAGTTTTTCCCGACGAAGCTAAAAGGCGAAACCTATTACTTGGGTTTTTGTTTACTCACGAATCGCCATTACCTTGCGCCAAGAAATCCCATTGCCATTGTAAGTAAATTAGGAAGCAGAAACATAACTCAAGTGCTTTAACAGAGACAACACTGTTGTGTCATTTACTCTTTGTATTATGGATACAGGCGAGTCCTAATCAACACACACATACTGGTCAAAACAAGTCAACTTCTTTTTAACAAAAATTCCCTTTATTTGGACGAGCCAGCCTGAAAGGATATACAGCAGGAGCTGGACTATGTCACGGTGCTATTCTGGTCTACTATGGGATGTGAGGAAACGCTCTCTTGGATTGGGTGAGCCTGATGTGGTCCGAATCAACTATTTGGGGAGAAGAGAGTTTGTCCAAAGACTTAAATTGGAAGCAACGTTAAATGTACATGATGGCTGCGTAAACTCAATTTCTTGGGGTAGTACAGGCGAATACATTTTATCTGGATCTGATGATACCACTTTGGTTATCAC
Xl3.1-CHK-1012715586 TTCTGTTACTGCTTCAGCTGCTGCCACTCTTCACCTCAATCACAAACAAACAAAACAGGGTTCGCTGGTCGGAGGAGTGGGTAGGATACATGGCTGCCAGAGCGTCCCTTCCAGCTTCCGGCCCTGTGTGTTGCTCGCACTGAGCGACTGGCACAACTTTACAGCAGGAACCTGTAAGTACCAGGCTGAGTGGCCGCCTTCCTTTGAGCTGTAGTCTTTGTACAGTTTTTCCCGACGAAGCTAAAAGGCGAAACCTATTACTTGGGTTTTTGTTTACTCACGAATCGCCATTACCTTGCGCCAAGAAATCCCATTGCCATTGTAAGTAAATTAGGAAGCAGAAACATAACTCAAGTGCTTTAACAGAGACAACACTGTTGTGTCATTTACTCTTTGTATTATGGATACAGGCGAGTCCTAATCAACACACACATACTGGTCAAAACAAGTCAACTTCTTTTTAACAAAAATTCCCTTTATTTGGACGAGCCAGCCTGAAAGGATATACAGCAGGAGCTGGACTATGTCACGGTGCTATTCTGGTCTACTATGGGATGTGAGGAAACGCTCTCTTGGATTGGGTGAGCCTGATGTGGTCCGAATCAACTATTTGGGGAGAAGAGAGTTTGTCCAAAGACTTAAATTGGAAGCAACGTTAAATGTACATGATGGCTGCGTAAACTCAATTTCTTGGGGTAGTACAGGCGAATACATTTTATCTGGATCTGATGATACCACTTTGGTTATCACTAACCC
consensus depths 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
BLH ATG 529 25
BLH MIN 529 26
BLH OVR 529 109
PROTEIN --- Dm ---- 6e-008 NP_647657.1 CG8001-PA [Drosophila melanogaster] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------=============================================================================================================================================
PREDICTED - Gg ---- 1e-016 XP_001231356.1 PREDICTED: similar to MSTP055, partial [Gallus gallus] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------====================================================================================================================================
PREDICTED - Cf ---- 3e-026 XP_862672.1 PREDICTED: similar to IQ motif and WD repeats 1 isoform a isoform 5 [Canis familiaris] =====================================================================================================
PREDICTED - Mm ---- 3e-026 XP_981532.2 PREDICTED: IQ motif and WD repeats 1 [Mus musculus] ========================================================================================================================================
PREDICTED - Bt ---- 2e-026 XP_001254045.1 PREDICTED: similar to IQ motif and WD repeats 1 isoform 2 [Bos taurus] ==================================================================================================================
PROTEIN --- Hs ---= 1e-026 NP_001017977.1 IQ motif and WD repeats 1 isoform b [Homo sapiens] ======================================================================================================================================
PREDICTED = Dr ==== 9e-027 XP_692923.3 PREDICTED: novel protein similar to vertebrate Q motif and WD repeats 1 (IQWD1) [Danio rerio] =====================================================================================
PROTEIN === Xt ==== 2e-036 NP_001073033.1 novel protein similar to IQ motif and WD repeats 1 (IQWD1) [Xenopus tropicalis] ===================================================================================================
PREDICTED = Xl ==== 3e-038 NP_001098734.1 hypothetical protein LOC445867 [Xenopus laevis] ===================================================================================================================================
Xl3.1-IMAGE:5048938.5 TAG---------------------------TAA------------------------------------------------------------------------------TAA------TAG------------TAA---------------------------------------------------ATG---------------TAA------------------------------------------------------------------------------------------------------ATG
ORF [ open reading frame ...
5 1 2 bld Emb4 IMAGE:4680393.5p TTCTATTTCTGTTACTGCTTCAGCTGCTGCCACTCTTCACCTCAATCACAAACAAACAAAACAGGGTTCGCTGGTCGGAGGAGTGGGTAGGATACATGGCTGCCAGAGCGTCCCTTCCAGCTTCCGGCCCTGTGTGTTGCTCGCACTGAGCGACTGGCACAACTTTACAGCAGGAACCTGTAAGTACCAGGCTGAGTGGCCGCCTTCCTTTGAGCTGTAGTCTTTGTACAGTTTTTCCCGACGAAGCTAAAAGGCGAAACCTATTACTTGGGTTTTTGTTTACTCACGAATCGCCATTACCTTGCGCCAAGAAATCCCATTGCCATTGTAAGTAAATTAGGAAGCAGAAACATAACTCAAGTGCTTTAACAGAGACAACACTGTTGTGTCATTTACTCTTTGTATTATGGATACAGGCGAGTCCTAATCAACACACACATACTGGTCAAAACAAGTCAACTTCTTTTTAACAAAAATT
5 1 2 seed Ov1 out IMAGE:5048938.5p GATATCGTCGACCCACGCGTCCGCTTTGAGCTGTAGTCTTTGTACAGTTTTTCCCGACGAAGCTAAAAGGCGAAACCAAGCACTTGGGTTTTTGTTTACTCACGAATCGCCATTACCTTGCGCCAAGAAATCCCATTGCCATTGTAAGTAAATTAGGAAGCAGAAACATAACTCAAGTGCTTTAACAGAGACAACACTGTTGTGTCATTTACTCTTTGTATTATGGATACAGGCGAGTCCTAATCAACACACACATACTGGTCAAAACAAGTCAACTTCTTTTTAACAAAAATTCCCTTTATTTGGACGAGCCAGCCTGAAAGGATATACAGCAGGAGCTGGACTATGTCACGGTGCTATTCTGGTCTACTATGGGATGTGAGGAAACGCTCTCTTGGATTGGGTGAGCCTGATGTGGTCCGAATCAACTATTTGGGGAGAAGAGAGTTTGTCCAAAGACTTAAATTGGAAGCAACGTTAAATGTACATGATGGCTGCGTAAACTCAATTTCTTGGGGTAGTACAGGCGAATACATTTTATCTGGATCTGATGATACCACTTTGGTTATCACTAACCCCT
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