Gurdon Institute Xenopus tropicalis EST Database

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Estimated expression levels relative to total library clones.
(detailed explanation)

0.01% 0.01%
Stage specific expression levels Tissue specific expression levels
stage 1 5 10 15 20 25 30 35 40 45 50 55 60tissue Bod Bone Brn Eye Fat Hrt Int Kid Liv Lun Mus Ova Ovi Panc Ski Spl Sto Te Thy

 Related Clusters
(none)

 This cluster: approximate FL confidence score = 9%

 1012084673 Xt7.1-CBSS1395.5 - 10 ESTs
                                                                       .......-20.......-10.......0.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760.......770.......780.......790.......800.......810.......820.......830.......840.......850.......860.......870.......880.......890.......900.......910.......920.......930.......940.......950.......960.......970.......980.......990.......1000......1010......1020......1030......1040....
 ?   ?   ?    ?    ?     ?    ?   ? 
                                                      Xt7.1-CBSS1395.5                            TGATACCACTAATAAGCCTACTTCGTACATGATGGAGCCACCTCCTAGCTATGTCAATCAAGGATTTGACCCACCCAGGGGGGGAATGATTGGGTTTGCTAATGCCTCAGCTCCGCAAGTCCATACCACAGTGGTGAACATAATTCCTGGAGAATTGTCGATACGAGACCACTTGCCCTGGTCCGTTTTTAACACCTTTTACATGAACTTCTGCTGCCTGGGTTTCATTGCAGTTATTTTCTCTGTAAAGTCCCGGGATCGGAAGGTGATTGGAGACAGGATTGGAGCCATGAGCTACGGTTCTACTGCCCGTAATCTCAACATTGCCGCTACTATGTTCACCGTCATTACTATTATTATTGTGTTAATCATGTTACTTTCTGCACCCCGGCCACAGAGAATAGGCTAATAGTGAAGACGATTGAGCAGCCACAGCATGTACCCATCCTTCATCCTCATCAATTGGAAGGAAAGTCCACTTCTGGAGTTCTTTTTATATGTTGCAACCTTAAGTTCCAAAAATAAATGACAGTTTCCACATTTACCATTTAAATTTCTTATTTAGCATTAAAGTGGATGTTCATCATTATATTGAACAATATAGATGGACCTATTCTAAGCTTCTTTTCCACCACGGCACGTAATGTTACAGAGTTTATTTCAAAGGTCTGATAATGATGTATTTTATGGAATTGTTACGGTGGGGCATGACCCCCCCCATTTGGGCTGAATGACTAGATTAAATTTGATCCATCT
                                                  Xt7.1-CHK-1008235992                                  CACTAATAAGCCTACTTCGTACATGATGGAGCCACCTCCTAGCTATGTCAATCAAGGATTTGACCCACCCAGGGGGGGAATGATTGGGTTTGCTAATGCCTCAGCTCCGCAAGTCCATACCACAGTGGTGAACATAATTCCTGGAGAATTGTCGATACGAGACCACTTGCCCTGGTCCGTTTTTAACACCTTTTACATGAACTTCTGCTGCCTGGGTTTCATTGCAGTTATTTTCTCTGTAAAGTCCCGGGATCGGAAGGTGATTGGAGACAGGATTGGAGCCATGAGCTACGGTTCTACTGCCCGTAATCTCAACATTGCCGCTACTATGTTCACCGTCATTACTATTATTATTGTGTTAATCATGTTACTTTCTGCACCCCGGCCACAGAGAATAGGCTAATAGTGAAGACGATTGAGCAGCCACAGCATGTACCCATCCTTCATCCTCATCAATTGGAAGGAAAGTCCACTTCTGGAGTTCTTTTTATATGTTGCAACCTTAAGTTCCAAAAATAAATGACAGTTTCCACATTTACCATTTAAATTTCTTATTTAGCATTAAAGTGGATGTTCATCATTATATTGAACAATATAGATGGACCTATTCTAAGCTTCTTTTCCACCACGGCACGTAATGTTACAGAGTTTATTTCAAAGGTCTGATAATGATGTATTTTATGGAATTGTTACGGTGGGGCATGACCCCCCCCATTTGGGCTGAATGACTAGATTAAATTTGATCCATCTATAAAA
                                                      consensus depths                                 2     2     5     5     7     7     7     7     8     8     8     8     8     8     7     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     7     8     7     8     7     8     7     8     7     8     7     8     7     8     7     8     7     8     7     8     7     8     8     9     8     9     8     9     8     9     8     9     8     9     7     9     8     9     8     9     8     9     8     9     8     9     5     6     4     6     4     5     4     5     4     5     4     6     4     4     4     4     4     4     4     4     4     4     4     4     4     4     4     4     4     4     3     3     2     3     2     3     2     3
                                               BLH ATG     -17      12                            
                                                                                                                                                                           PREDICTED - Gg ---- 8e-017     XP_420924.1 PREDICTED: similar to haemopoiesis related membrane protein 1; fragilis4 [Gallus gallus] =================================================================================================================================================================================
                                                                                                PROTEIN --- Hs ---- 9e-020     NP_006426.1 interferon induced transmembrane protein 2 (1-8D); interferon-inducible [Homosapiens] ========================================================================================================================================================================================================================================================================
                                                                                          PROTEIN --- Mm ---- 3e-023     NP_079654.1 fragilis [Mus musculus] ======================================================================================================================================================================================================================================================================================================================================
                                                                                             PROTEIN --- Xt ---- 2e-029     AAH89694.1 Unknown (protein for MGC:107971) [Xenopus tropicalis] ===================================================================================================================================================================================================================================================================================================
                                                                                 PROTEIN --- Xl ---= 2e-051     AAI29794.1 Unknown (protein for MGC:160514) [Xenopus laevis] =============================================================================================================================================================================================================================================================================================================
                                                                                 PREDICTED - ?? ---= 2e-051     NP_001091215.1 hypothetical protein LOC100036989 [Xenopus laevis] ========================================================================================================================================================================================================================================================================================================
                                                      Xt7.1-CBSS1395.5           ATG------------------------------------------ATGATG---------------------------------------------------ATG------------------------------------------------------------------------------------------------------------------ATG------------------------------------------------------------------------------------ATG------------------------------------------ATG---------------------------------ATG---------------------------------TAATAGTGA---------------------ATG---------------------------------------------------------------------------------------TGA---------------------------------TAG---TAA---------------------TGA------TAGATG---------TAA------------------------ATG---------------------------------------------------------------------------------TGAATG------------------------TAA
                                                                   ORF           ... open reading frame                                                                                                                                                                                                                                                                                                                                                                                                                ]
  5   1   2   30  bld Spl2 5x3                            CBSS1395.fwd TTATGACAAGATGTCCACGGAGAGCACTGATACCACTAATAAGCCTACTTCGTACATGATGGAGCCACCTCCTAGCTATGTCAATCAAGGATTTGACCCACCCAGGGGGGGAATGATTGGGTTTGCTAATGCCTCAGCTCCGCAAGTCCATACCACAGTGGTGAACATAATTCCTGGAGAATTGTCGATACGAGACCACTTGCCCTGGTCCGTTTTTAACACCTTTTACATGAACTTCTGCTGCCTGGGTTTCATTGCAGTTATTTTCTCTGTAAAGTCCCGGGATCGGAAGGTGATTGGAGACAGGATTGGAGCCATGAGCTACGGTTCTACTGCCCGTAATCTCAACATTGCCGCTACTATGTTCACCGTCATTACTATTATTATTGTGTTAATCATGTTACTTTCTGCACCCCGGCCACAGAGAATAGGCTAATAGTGAAGACGATTGAGCAGCCACAGCATGTACCCATCCTTCATCCTCATCAATTGGAAGGAAAGTCCACTTCTGGAGTTCTTTTTATATGTTGCAACCTTAAGTTCCAAAAATAAATGACAGTTTCCACATTTACCATTTAAATTTCTTATTTAGCATTAAAGTGGATGTTCATCATTATATTGAACAATATAGATGGACCTATTCTAAGCTTCTTTTCCACCACGGCACGTAATGTTACAGAGTTTATTTCANAGGTCTGATAATGATGTATTTTATGGAATTGTTACGGTGGGGCATGACCCCCCCCCATTTGGGCTGAATGACTAGATTAAATTTGATCCATCTATAAAAAAAAAAAAAAAA
  5   1   2       chi Tad0      in                     NISC_no04a03.y1    TTTCTAGTATGACGAGGAGTCCACTGATACCACTAATAAGCCTGCTTCGTACATGATGGAGCCACCTCCTAGCTATGTCAATCAAGGATTTTACCCACCCAGGGGGGGAATGACTGGGTTTGCTAATGCCCCAGCTCCGCAAGTCCATACCACACTGGTGAACATAATTCCTGGAGAATTGTCAATACGAGACCACTTGCCCTGGTCCATTTTTAACACCTTTTACATAAACTTCTGCTGCCTGGGTTTCATTGCAGTTATTTTCTCTGTAAagaaacagggaatgaccatgaaacaggccaaatggttaggagcaggaggccccactgacacctgggcccaccgggagttttcctggtatcctgttgggtcagtccaacactgAGTGATGGCGACGAAGGGAGCAGTCCCGGGATCGGAAGGTGATTGGAGACAGGATTGGAGCCATGAGCTACGGTTCTACTGCCCGTAATCTCAACATTGCCGCTACTATGTTCACCGTCATTACTATTATTGTTGTGTTAATCATGTTACTTTCTGCACCCCGGCCACAGAGAATAGGCTAATAGTGAAGATGATCGAGCAGCCACAGCACGTACCCATCCTTCATCCTCATCAGTTGGAAAA
  5   1   2       bld Spl2      ?                          CBSS876.fwd                                 CCACTAATAAGCCTACTTCGTACATGATGGAGCCACCTCCTAGCTATGTCAATCAAGGATTTGACCCACCCAGGGGGGGAACGATTGGGTTTGCTAATGCCTCAGCTCCGCAAGTCCATACCACAGTGGTGAACATAATTCCTGGAGAATTGTCGATACGAGACCACTTGCCCTGGTCCGTTTTTAACACCTTTTACATGAACTTCTGCTGCCTGGGTTTCATTGCAGTTATTTTCTCTGTAAAGTCCCGGGATCGGAAGGTGATTGGAGACAGGATTGGAGCCATGAGCTACGGTTCTACTGCCCGTAATCTCAACATTGCCGCTACTATGTTCACCGTCATTACTATTATTATTGTGTTAATCATGTTACTTTCTGCACCCCGGCCACAGAGAATAGGCTAATAGTGAAGACGATTGAGCAGCCACAGCATGTACCCATCCTTCATCCTCATCAATTGGAAGGAAAGTCCACTTCTGGAGTTCTTTTTATATGTTGCAACCTTAAGTTCCAAAAATAAATGACAGTTTCCACATTTACCATTTAAATTTCTTATTTAGCATTAAAGTGGATGTTCATCATTATATTGAACAATATAGATGGACCTATTCTAAGCTTCTTTTCCACCACGGCACGTAATGTTACAGAGTTTATTTCAAAGGTCTGATAATGATGTATTTTATGGAATTGTTACGGTGGGGCATGACCCCCCCC
  5   1   2       bld Bone      in                         CBTC891.fwd                                  CACTAATAAGCCTACTTCGTACATGATGGAGCCACCTCCTAGCTATGTCAATCAAGGATTTGACCCACCCAGGGGGGGAATGATTGGGTTTGCTAATGCCTCAGCTCCGCAAGTCCATACCACAGTGGTGAACATAATTCCTGGAGAATTGTCGATACGAGACCACTTGCCCTGGTCCGTTTTTAACACCTTTTACATGAACTTCTGCTGCCTGGGTTTCATTGCAGTTATTTTCTCTGTAAAGTCCCGGGATCGGAAGGTGATTGGAGACAGGATTGGAGCCATGAGCTACGGTTCTACTGCCCGTAATCTCAACATTGCCGCTACTATGTTCACCGTCATTACTATTATTATTGTGTTAATCATGTTACTTTCTGCACCCCGGCCACAGAGAATAGGCTAATAGTGAAGACGATCGAGCAGCCACAGCACGTACCCATCCTTCATCCTCATCAGTTGGAAGGAAAGTCCACTTCTGGAGTTCTTTTTATATGTTGCAACCTTAAGTTCCAAAAATAAATGACAGTTTCCAC
  3   1   2       bld Bone      in                         CBTC891.rev                                  CACTAATAAGCCTACTTCGTACATGATGGAGCCACCTCCTAGCTATGTCAATCAAGGATTTGACCCACCCAGGGGGGGAATGATTGGGTTTGCTAATGCCTCAGCTCCGCAAGTCCATACCACAGTGGTGAACATAATTCCTGGAGAATTGTCGATACGAGACCACTTGCCCTGGTCCGTTTTTAACACCTTTTACATGAACTTCTGCTGCCTGGGTTTCATTGCAGTTATTTTCTCTGTAAAGTCCCGGGATCGGAAGGTGATTGGAGACAGGATTGGAGCCATGAGCTACGGTTCTACTGCCCGTAATCTCAACATTGCCGCTACTATGTTCACCGTCATTACTATTATTATTGTGTTAATCATGTTACTTTCTGCACCCCGGCCACAGAGAATAGGCTAATAGTGAAGACGATCGAGCAGCCACAGCACGTACCCATCCTTCATCCTCATCAGTTGGAAGGAAAGTCCACTTCTGGAGTTCTTTTTATATGTTGCAACCTTAAGTTCCAAAAATAAATGACAGTTTCCAC
  3   1   2       bld Spl1 PIPE in                        CABK10443.3p                                             CTACTTCGTACATGATGGAGCCACCTCCTAGCTATGTCAATCAAGGATTTGACCCACCCAGGGGGGGAATGATTGGGTTTGCTAATGCCTCAGCTCCGCAAGTCCATACCACAGTGGTGAACATAATTCCTGGAGAATTGTCGATACGAGACCACTTGCCCTGGTCCGTTTTTAACACCTTTTACATGAACTTCTGCTGCCTGGGTTTCATTGCAGTTATTTTCTCTGTAAAGTCCCGGGATCGGAAGGTGATTGGAGACAGGATTGGAGCCATGAGCTACGGTTCTACTGCCCGTAATCTCAACATTGCCGCTACTATGTTCACCGTCATTACTATTATTATTGTGTTAATCATGTTACTTTCTGCACCCCGGCCACAGAGAATAGGCTAATAGTGAAGACGATTGAGCAGCCACAGCATGTACCCATCCTTCATCCTCATCAATTGGAAGGAAAGTCCACTTCTGGAGTTCTTTTTATATGTTGCAACCTTAAGTTCCAAAAATAAATGACAGTTTCCAC
  5   1   2       bld Spl1 PIPE in                        CABK10443.5p                                             CTACTTCGTACATGATGGAGCCACCTCCTAGCTATGTCAATCAAGGATTTGACCCACCCAGGGGGGGAATGATTGGGTTTGCTAATGCCTCAGCTCCGCAAGTCCATACCACAGTGGTGAACATAATTCCTGGAGAATTGTCGATACGAGACCACTTGCCCTGGTCCGTTTTTAACACCTTTTACATGAACTTCTGCTGCCTGGGTTTCATTGCAGTTATTTTCTCTGTAAAGTCCCGGGATCGGAAGGTGATTGGAGACAGGATTGGAGCCATGAGCTACGGTTCTACTGCCCGTAATCTCAACATTGCCGCTACTATGTTCACCGTCATTACTATTATTATTGTGTTAATCATGTTACTTTCTGCACCCCGGCCACAGAGAATAGGCTAATAGTGAAGACGATTGAGCAGCCACAGCATGTACCCATCCTTCATCCTCATCAATTGGAAGGAAAGTCCACTTCTGGAGTTCTTTTTATATGTTGCAACCTTAAGTTCCAAAAATAAATGACAGTTTCCACAAAAAAAAAAAAAAAAAA
  5   1   2      seed Hrt1      in                        CAAQ12495.5p                                                                 CCACCTCCTAGCTATGTCAATCAAGGATTTGACCCACCCAGGGGGGGAATGATTGGGTTTGCTAATGCCTCAGCTCCGCAAGTCCATACCACAGTGGTGAACATAATTCCTGGAGAATTGTCGATACGAGACCACTTGCCCTGGTCCGTTTTTAACACCTTTTACATGAACTTCTGCTGCCTGGGTTTCATTGCAGTTATTTTCTCTGTAAAGTCCCGGGATCGGAAGGTGATTGGAGACAGGATTGGAGCCATGAGCTACGGTTCTACTGCCCGTAATCTCAACATTGCCGCTACTATGTTCACCGTCATTACTATTATTATTGTGTTAATCATGTTACTTTCTGCACCCCGGCCACAGAGAATAGGCTAATAGTGAAGACGATTGAGCAGCCACAGCATGTACCCATCCTTCATCCTCATCAATTGGAAGGAAAGTCCACTTCTGGAGTTCTTTTTATATGTTGCAACCTTAAGTTCCAAAAATAAATGACAGTTTCCACATTTACCATTTAAATTTCTTATTTAGCATTAAAGTGGATGTTCATCATTATATTGAACAATATAGATGGACCTATTCTAAGCTTCTTTTCCACCACGGCACGTAATGTTACAGAGTTTATTTCAAAGGTCTGATAATGATGTATTTTATGGAATTGTTACGGTGGGGCATGACCCCCCCCATTTGGGCTGAATGACTAGATTAAATTTGATCCATCTATAAAAAA
  3   1   2       bld Hrt1      in                        CAAQ12495.3p                                                                                                                                                                                                                                                                                                                                                                                                                 TTACTTTCTGCACCCCGGCCACAGAGAATAGGCTAATAGTGAAGACGATTGAGCAGCCACAGCATGTACCCATCCTTCATCCTCATCAATNGGAAGGAAAGTCCACTTCTGGAGTTCTTTTTATATGTTGCAACCTTAAGTTCCAAAAATAAATGACAGTTTCCACATTTACCATTTAAATTTCTTATTTAGCATTAAAGTGGATGTTCATCATTATATTGAACAATATAGATGGACCTATTCTAAGCTTCTTTTCCACCACGGCACGTAATGTTACAGAGTTTATTTCAAAGGTCTGATAATGATGTATTTTATGGAATTGTTACGGTGGGGCATGACCCCCCCCATTTGGGCTGAATGACTAGATTAAATTTGATCCATCTATAAAAAA
  3   1   0       add Tad0      in                     NISC_no04a03.x1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCATCCTCATCAGTTGGAAAAAATTCCCCTTCTGGAGTTCTTTTAATGTGTTTCAACCATAAAATTATTCTGCATTCTGAAAATATTTACCTTCTGAATTTCCCCCTTAGCATTAAAGTGGAGGTTTATCGTTATCGGTAGTTATAAATCAAATCAGCTGTGTTTTTTTCGAAGACGTTTTGCCCGTCATTCAACTGGCTTTTGTAATTCAGTATGGGGAAAAATGGCTCATTTTGAATTGAGAAATGATGAGTCGGATGACTGGCAAAAAGTCCTTAAAAAAAACCCAGCAAGTCCAGTTAATTTGACTGATTACTCCAGATATACCTACGACCTGGATGAACCTTCACAGACAGATGTTTATCTTTATATAGCATGTTATCAATTGCCCTGTACTAAAAAATTTTTCCTCTTCTTTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaG

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