Gurdon Institute Xenopus tropicalis EST Database
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Application in use by Guest User - 18 Jan 2021 - database INFO-PUBLIC
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By Clone or Sequence Name
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Related Clusters
CS% VC Transcript Size Type Links % In % Out Identified Blast Description.
1 2.0 0Xt7.1-CAAJ12656.3 5 END 1 14 20 (no blast hit)
2 2.0 0Xt7.1-CAAJ12656.5 4 END 1 14 33 cut-like 2 [Homo sapiens]
3 2.0 0Xt7.1-CAAN9613.5 3 END 2 28 66 PREDICTED: similar to KIAA0293 [Gallus gallus]
4 2.0 0Xt7.1-CAAM8843.5 2 END 1 14 50 PREDICTED: similar to KIAA0293 [Gallus gallus]
This cluster: approximate FL confidence score = 0%
1012085673 Xt7.1-CAAM8843.3 - 7 ESTs
-1000.....-990......-980......-970......-960......-950......-940......-930......-920......-910......-900......-890......-880......-870......-860......-850......-840......-830......-820......-810......-800......-790......-780......-770......-760......-750......-740......-730......-720......-710......-700......-690......-680......-670......-660......-650......-640......-630......-620......-610......-600......-590......-580......-570......-560......-550......-540......-530......-520......-510......-500......-490......-480......-470......-460......-450......-440......-430......-420......-410......-400......-390......-380......-370......-360......-350......-340......-330......-320......-310......-300......-290......-280......-270......-260......-250......-240......-230......-220......-210......-200......-190......-180......-170......-160......-150......-140......-130......-120......-110......-100......-90.......-80.......-70.......-60.......-50.......-40.......-30.......-20.......-10.......0.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760.......770.......780.......790.......800.......810.......820.......830.......840.......850.......860.......870.......880.......890.......900.......910.......920.......930.......940.......950.......960.......970.......980.......990.......1000......1010......1020......1030......1040......1050......1060......1070......1080......1090......1100......1110......1120......1130......1140......1150......1160......1170......1180......1190......1200......1210......1220......1230......1240......1250......1260......1270......1280......1290......1300......1310......1320......1330......1340......1350......1360......1370......1380......1390......1400......1410......1420......1430......1440......1450......1460......1470......1480......1490......1500......1510......1520......1530......1540......1550......1560
? ? ? ? ? ? ? ?
Xt7.1-CAAM8843.3 AACGTTGTGATTCTTGTAGCTCTGAACACACATTGTGTTGTGAAACAGATCCAAGCAGAATGCATAGAGAAGATGAAGCTGCCCAACACTGTGTCGACCTTCAGAGACCACATTATCTAAGAAGAAGCAGTTCTTTTTATGATAAGTTGCGTCCTTCTAGTGCGCATGACTGTTCTCATAAGGAAATTACAAACCCAGAACGGTCACAGACTGACCCAATTAGCTTTAAATCCACAGCAGAATCTTCACGAAGCAGCCTGGAAGTGTCTCTAAACTCTCCTTCAGCTGCCTCCTCTCCTGGCCTAATGATGTCTGTGTCCCCTGTCCCTACTTCCTCTGCGCCCATTTCTCCATCCCTGCCTAACACTGTTTCAGTAAAACTTCATAAACTGAACACTGCCAGTGACAATGCCCCATTACACCTATCCATAAAACATAGTCCCAACAACCAGAGGAGAAATGAGAAGATGGCCAATTTAAATAACATTATCCACAGGCTCGAGAGAGCAGCAAATAAGGAGGAGACCCTGGAATGGGAATTTTGAAAAATAACCTAAAGACACAGTATCTTTTTGTAACAAACTGGAACCAAGTAAAGCAGAGTGCTTGCAGAGAACATATATGGGATAATTTATATTTTATGGTTCTTGTTTTGTGAAGTAGAAGCTTATGAGAACAAGAGTTTAGAAAACAAACTACTTCCAAAAATTCCATGGAATGAAAAAAATATTGACTTTGTTTTCATGTTAAAAAGTAATTCTTTTAGAAGAAAAGATATTTATAAACATTTTAGATATTTTATTAAATAATATTTGGAATTTATTACCAACCTGGGGCTGCTTTGATAACAGATAATTATAACATGACAGATGTGTAGCAGTGATGGTTCAGTGTATAGCGTGTTCCTGTAGCTTGCCACTGGATGAGATTAAAATTCCGCTTAAGCCATTGTTGAAGCACTAGAAGAATGACCAAACAAAGTATGTTTCAAGAGGCGTTCTAATCCTGCAGCTGTCTCTAAGACAACCTATTTCCCCCCAAATGGAACAGTCTGAAAGACTCTAAATTCCAAATGGGAAGCCATCATGTGTGACTTGATTCATTGGTCCATTTGATAAAAATCTATCA
Xt7.1-CHK-1008239030 GTGATTCTTGTAGCTCTGAACACACATTGTGTTGTGAAACAGATCCAAGCAGAATGCATAGAGAAGATGAAGCTGCCCAACACTGTGTCGACCTTCAGAGACCACATTATCTAAGAAGAAGCAGTTCTTTTTATGATAAGTTGCGTCCTTCTAGTGCGCATGACTGTTCTCATAAGGAAATTACAAACCCAGAACGGTCACAGACTGACCCAATTAGCTTTAAATCCACAGCAGAATCTTCACGAAGCAGCCTGGAAGTGTCTCTAAACTCTCCTTCAGCTGCCTCCTCTCCTGGCCTAATGATGTCTGTGTCCCCTGTCCCTACTTCCTCTGCGCCCATTTCTCCATCCCTGCCTAACACTGTTTCAGTAAAACTTCATAAACTGAACACTGCCAGTGACAATGCCCCATTACACCTATCCATAAAACATAGTCCCAACAACCAGAGGAGAAATGAGAAGATGGCCAATTTAAATAACATTATCCACAGGCTCGAGAGAGCAGCAAATAAGGAGGAGACCCTGGAATGGGAATTTTGAAAAATAACCTAAAGACACAGTATCTTTTTGTAACAAACTGGAACCAAGTAAAGCAGAGTGCTTGCAGAGAACATATATGGGATAATTTATATTTTATGGTTCTTGTTTTGTGAAGTAGAAGCTTATGAGAACAAGAGTTTAGAAAACAAACTACTTCCAAAAATTCCATGGAATGAAAAAAATATTGACTTTGTTTTCATGTTAAAAAGTAATTCTTTTAGAAGAAAAGATATTTATAAACATTTTAGATATTTTATTAAATAATATTTGGAATTTATTACCAACCTGGGGCTGCTTTGATAACAGATAATTATAACATGACAGATGTGTAGCAGTGATGGTTCAGTGTATAGCGTGTTCCTGTAGCTTGCCACTGGATGAGATTAAAATTCCGCTTAAGCCATTGTTGAAGCACTAGAAGAATGACCAAACAAAGTATGTTTCAAGAGGCGTTCTAATCCTGCAGCTGTCTCTAAGACAACCTATTTCCCCCCAAATGGAACAGTCTGAAAGACTCTAAATTCCAAATGGGAAGCCATCATGTGTGACTTGATTCATTGGTCCATTTGATAAAAAT
consensus depths 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 5 5 5 5 5 5 6 6 6 6 6 6 6 6 6 6 6 6 6 6 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 6 6 6 6 6 6 6 6 6 6 6 6 5 5 5 5 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
BLH MIN 194 14
PREDICTED - Gg ---- 3e-024 XP_426977.1 PREDICTED: similar to Homeobox protein Cux-2 (Cut-like 2), partial [Gallus gallus] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------============================================================================================================================================================================================================================================================================================================================================================
...PROTEIN --- Mm ---- 7e-030 NP_031830.2 cut-like 2 [Mus musculus] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------=========================================================================================================================================================================================================================================================================================================================================================
...PREDICTED - ?? ---- 1e-036 XP_693902.1 PREDICTED: similar to cut-like 2 [Danio rerio] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------=========================================================================================================================================================================================================================================================================================================================================================
...PROTEIN --- Hs ---- 8e-037 NP_056082.2 cut-like 2 [Homo sapiens] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------=========================================================================================================================================================================================================================================================================================================================================================
Xt7.1-CAAM8843.3 ATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGATG------------------------------------------------------------------------------------------------------------------------------------------------------------ATG------------------------------------------------------------------------TGA---------TAA------------------TAA---------------TAA---------------------------------------------------------------------------------------------------------------------------------------------------ATG------------------------------------------------------------TAA---------------------------------TGATAA---------------TGA---ATG------------------------------------TAG------------TGA---TAA---------TAA------------------------TGA---------------------------------------------------------------------------------TGA------------------------------ATG------------------------TGATAA
ORF ... open reading frame ]
5 1 2 bld Te5 in CAAO3525.5p AACTGGTTCCATAACTACAGGTCACGCATGCGCAGGGATATCCTGATAGAGGGTCAGCAGGACAATGACACTGATCAAGAGCCAAGCAGCTGTGATAGTTTCACATCAGTATGTACCTTACACAGGGATCCAGCTCTGCACAGCCTGGCCTCTGAAGGTGTTGATAGAAAACCAGTAGTTTGTGACATGGATCACCTAATGCACAACGATGGTTGCACTGAAGAGAGAGTGGCTACAAGGGAAATTAAGAAAGAGAACATAGAAGAAGGAGAAGAAGAAAAGGATGACTCTTCTAAACGTTGTGATTCTTGTAGCTCTGAACACACATTGTGTTGTGAAACAGATCCAAGCAGAATGCATAGAGAAGATGAAGCTGCCCAACACTGTGTCGACCTTCAGAGACCACATTATCTAAGAAGAAGCAGTTCTTTTTATGATAAGTTGCGTCCTTCTAGTGCGCATGACTGTTCTCATAAGGAAATTACAAACCCAGAACGGTCACAGACTGACCCAATTAGCTTTAAATCCACAGCAGAATCTTCACGAAGCAGCCTGGAAGTGTCTCTAAACTCTCCTTCAGCTGCCTCCTCTCCTGGCCTAATGATGTCTGTGTCCCCTGTCCCTACTTCCTCTGCGCCCATTTCTCCATCCCTGCCTAACACTGTTTCAGTAAAACTTCATAAACTGAACACTGCCAGTGACAATGCCCCATTACACCTATCCATAAAACATAGTCCCAACAACAGA
3 1 2 seed Te3 out CAAM8843.3p AACGTTGTGATTCTAGTAGCTCTGAACACACATTGTGTTGTGAAACAGATCCAAGCAGAATGCATAGAGAAGATGAAGCTGCCCAACACTGTGTCGACCTTCAGAGACCACATTATCTAAGAAGAAGCAGTTCTTTTTATGATAAGTTGCGTCCTTCTAGTGCGCATGACTGTTCTCATAAGGAAATTACAAACCCAGAACGGTCACAGACTGACCCAATTAGCTTTAAATCCACAGCAGAATCTTCACGAAGCAGCCTGGAAGTGTCTCTAAACTCTCCTTCAGCTGCCTCCTCTCCTGGCCTAATGATGTCTGTGTCCCCTGTCCCTACTTCCTCTGCGCCCATTTCTCCATCCCTGCCTAACACTGTTTCAGTAAAACTTCATAAACTGAACACTGCCAGTGACAATGCCCCATTACACCTATCCATAAAACATAGTCCCAACAACCAGAGGAGAAATGAGAAGATGGCCAATTTAAATAACATTATCCACAGGCTCGAGAGAGCAGCAAATAAGGAGGAGACCCTGGAATGGGAATTTTGAAAAATAACCTAAAGACACAGTATCTTTTTGTAACAAACTGGAACCAAGTAAAGCAGAGTGCTTGCAGAGAACATATATGGGATAATTTATATTTTATGGTTCTTGTTTTGTGAAGTAGAAGCTTATGAGAACAAGAGTTTAGAAAACAAACTACTTCCAAAAATTCCATGGAATGAAAAAAATATTGACTTTGTTTTCATGTTAAAAAGTAATTCTTTTAGAAGAAAAGATATTTATAAACATTTTAGATATTTTATTAAATAATATTTGGAATTTATTACC
3 1 2 bld Te4 out CAAN9613.3p AAGAAGAAGCAGTTCTTTTTATGATAAGTTGCGTCCTTCTAGTGCGCATGACTGTTCTCATAAGGAAATTACAAACCCAGAACGGTCACAGACTGACCCAATTAGCTTTAAATCCACAGCAGAATCTTCACGAAGCAGCCTGGAAGTGTCTCTAAACTCTCCTTCAGCTGCCTCCTCTCCTGGCCTAATGATGTCTGTGTCCCCTGTCCCTACTTCCTCTGCGCCCATTTCTCCATCCCTGCCTAACACTGTTTCAGTAAAACTTCATAAACTGAACACTGCCAGTGACAATGCCCCATTACACCTATCCATAAAACATAGTCCCAACAACCAGAGGAGAAATGAGAAGATGGCCAATTTAAATAACATTATCCACAGGCTCGAGAGAGCAGCAAATAAGGAGGAGACCCTGGAATGGGAATTTTGAAAAATAACCTAAAGACACAGTATCTTTTTGTAACAAACTGGAACCAAGTAAAGCAGAGTGCTTGCAGAGAACATATATGGGATAATTTATATTTTATGGTTCTTGTTTTGTGAAGTAGAAGCTTATGAGAACAAGAGTTTAGAAAACAAACTACTTCCAAAAATTCCATGGAATGAAAAAAATATTGACTTTGTTTTCATGTTAAAAAGTAATTCTTTTAGAAGAAAAGATATTTATAAACATTTTAGATATTTTATTAAATAATATTTGGAATTT
3 1 2 bld Te3 FL out CAAM5167.3p GAAGAAGCAGTTCTTTTTATGATAAGTTGCGTCCTTCTAGTGCGCATGACTGTTCTCATAAGGAAATTACAAACCCAGAACGGTCACAGACTGACCCAATTAGCTTTAAATCCACAGCAGAATCTTCACGAAGCAGCCTGGAAGTGTCTCTAAACTCTCCTTCAGCTGCCTCCTCTCCTGGCCTAATGATGTCTGTGTCCCCTGTCCCTACTTCCTCTGCGCCCATTTCTCCATCCCTGCCTAACACTGTTTCAGTAAAACTTCATAAACTGAACACTGCCAGTGACAATGCCCCATTACACCTATCCATAAAACATAGTCCCAACAACCAGAGGAGAAATGAGAAGATGGCCAATTTAAATAACATTATCCACAGGCTCGAGAGAGCAGCAAATAAGGAGGAGACCCTGGAATGGGAATTTTGAAAAATAACCTAAAGACACAGTATCTTTTTGTAACAAACTGGAACCAAGTAAAGCAGAGTGCTTGCAGAGAACATATATGGGATAATTTATATTTTATGGTTCTTGTTTTGTGAAGTAGAAGCTTATGAGAACAAGAGTTTAGAAAACAAACTACTTCCAAAAATTCCATGGAATGAAAAAAATATTGACTTTGTTTTCATGTTAAAAAGTAATTCTTTTAGAAGAAAAGATATTTATAAACATTTTAGATATTTTATT
3 1 2 bld Te3 out CAAM14320.3p TCCCCTGTCCCTACTTCCTCTGCGCCCATTTCTCCATCCCTGCCTAACACTGTTTCAGTAAAACTTCATAAACTGAACACTGCCAGTGACAATGCCCCATTACACCTATCCATAAAACATAGTCCCAACAACCAGAGGAGAAATGAGAAGATGGCCAATTTAAATAACATTATCCACAGGCTCGAGAGAGCAGCAAATAAGGAGGAGACCCTGGAATGGGAATTTTGAAAAATAACCTAAAGACACAGTATCTTTTTGTAACAAACTGGAACCAAGTAAAGCAGAGTGCTTGCAGAGAACATATATGGGATAATTTATATTTTATGGTTCTTGTTTTGTGAAGTAGAAGCTTATGAGAACAAGAGTTTAGAAAACAAACTACTTCCAAAAATTCCATGGAATGAAAAAAATATTGACTTTGTTTTCATGTTAAAAAGTAATTCTTTTAGAAGAAAAGATATTTATAAACATTTTAGATATTTTATTAAATAATATTTGGAATTTATTACCAACCTGGGGCTGCTTTGATAACAGATAATTATAACATGACAGATGTGTAGCAGTGATGGTTCAGTGTATAGCGTGTTCCTGTAGCTTGCCACTGGATGAGATTAAAATTCCGCTTAAGCCATTGTTGAAGCACTAGAAGAATGACCAAACAAAGTATGTTTCAAGAGGCGTTCTAATCCTGCAGCTGTCTCTAAGACAACCTATTTCCCCCCAAATGGAACAGTCTGAAAGACTCTAAATTCCAAATGGGAAGCCATCATGTGTGACTTGATTCATTGGTCCATTTGATAAAAATCTATCATAT
3 1 2 bld Te5 in CAAO3525.3p ATCCCCTGCCTAACACTGTTTCAGTAAAACTTCATAAACTGAACACTGCCAGTGACAATGCCCCATTACACCTATCCATAAAACATAGTCCCAACAACCAGAGGAGAAATGAGAAGATGGCCAATTTAAATAACATTATCCACAGGCTCGAGAGAGCAGCAAATAAGGAGGAGACCCTGGAATGGGAATTTTGAAAAATAACCTAAAGACACAGTATCTTTTTGTAACAAACTGGAACCAAGTAAAGCAGAGTGCTTGCAGAGAACATATATGGGATAATTTATATTTTATGGTTCTTGTTTTGTGAAGTAGAAGCTTATGAGAACAAGAGTTTAGAAAACAAACTACTTCCAAAAATTCCATGGAATGAAAAAAATATTGACTTTGTTTTCATGTTAAAAAGTAATTCTTTTAGAAGAAAAGATATTTATAAACATTTTAGATATTTTATTAAATAATATTTGGAATTTATTACCAACCTGGGGCTGCTTTGATAACAGATAATTATAACATGACAGATGTGTAGCAGTGATGGTTCAGTGTATAGCGTGTTCCTGTAGCTTGCCACTGGATGAGATTAAAATTCCGCTTAAGCCATTGTTGAAGCACTAGAAGAATGACCAAACAAAGTATGTTTCAAGAGGCGTTCTAATCCTGCAGCTGTCTCTAAGACAACCTATTTCCCCCCAAATGGAACAGTCTGAAAGACTCTAAATTCCAAATGGGAAGCCATCATGTGTGACTTGATTCATTGGTCCATTTGATAAAAATCTATCATAT
5 1 2 bld Brn2 out CAAJ12260.5p ATGGAATGAAAAAAATATTGACTTTGTTTTCATGTTAAAAAGTAATTCTTTTAGAAGAAAAGATATTTATAAACATTTTAGATATTTTATTAAATAATATTTGGAATTTATTACCAACCTGGGGCTGCTTTGATAACAGATAATTATAACATGACAGATGTGTAGCAGTGATGGTTCCGTGTATAGCGTGTTCCTGTAGCTTGCCACTGGATGAGATTAAAATTCCGCTTAAGCCATTGTTGAAGCACTAGAAGAATGACCAAACAAAGTATGTTTCAAGAGGCGTTCTAATCCTGCAGCTGTCTCTAAGACAACCTATTTCCCCCCAAATGGAACAGTCTGAAAGACTCTAAATTCCAAATGGGAAGCCATCATGTGTGACTTGATTCATTGGTCCATTTGATAAAAATCTATCATATAGTTCTGTGTAGTGTTTATATGTTGTGGAGATGCCAGTTGGACAGCACAGGGTCAAAACATTATTTCACCAATTATTTAAGAGGTTGAAACACAATGCAACATTCCTACCAACATCCCCCACTGGTAGTTTGTCACTCACATGGCTATGTCCTTTCTCTCTCTCACTCTCTCTCTAGGCCATGGGGACCTGTGGTGTCACAGTAACCATACAGGGCATGGTTACTTCCTTTCTAAATTGTTTGGTAAAACAGCTGATAGAGGGAGTACACCTGGAGATACTTTCTTCTTGTGGGACCACTGATAAACTTTCCTGGTGCATGCAGTGAAAAATATGGACTGCCCTTGGAAATGTAAGCATTTGGTAGTTATGCAGGCACAGTGTAATATAAGTCAGGCCGGACTGGNCATCTATGGATTCTGGCAAATGCC
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