Gurdon Institute Xenopus tropicalis EST Database

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Introduction
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Unique Expressed Sequence Set
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Estimated expression levels relative to total library clones.
(detailed explanation)

0.01% 0.01%
Stage specific expression levels Tissue specific expression levels
stage 1 5 10 15 20 25 30 35 40 45 50 55 60tissue Bod Bone Brn Eye Fat Hrt Int Kid Liv Lun Mus Ova Ovi Panc Ski Spl Sto Te Thy

 Related Clusters

         CS%  VC Transcript                               Size Type    Links    % In    % Out     Identified Blast Description.
     1   0.0    0Xt7.1-CABJ11886.3                          18 END     1          11        5                Similar to homeo box A3 [Xenopus laevis]
     2   2.0    0Xt7.1-CABK2884.3                           16 END     1          11        6                Cytochrome b-245, beta polypeptide (chronic granulomatous disease) [Xenopus tropicalis]

 This cluster: approximate FL confidence score = 0%

 1012090807 Xt7.1-XZT57213.5 - 9 ESTs
                                                                       .........-70.......-60.......-50.......-40.......-30.......-20.......-10.......0.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760.......770.......780.......790.......800.......810.......820.......830.......840.......850.......860.......870.......880.......890.......900.......910.......920.......930.......940.......950.......960.......970.......980.......990.......1000......1010......1020......1030......1040......1050......1060......1070......1080......1090......1100......1110......1120......1130......1140......1150......1160......1170......1180......1190......1200......1210......1220......1230......1240......1250......1260......1270......1280......1290......1300......1310......1320......1330..
 ?   ?   ?    ?    ?     ?    ?   ? 
                                                      Xt7.1-XZT57213.5                                                                                AGGAAGCCCCCAAATTGACCCATTTGTGATTAAGAAGTAATACCCATTTCTGACTACAGAGGGGGCTCAGCCCGACCATCACCTTGGGGGAACAATAAAACATTTCCACTTGATCTATTTTTCTTAAACATTTTTTTAAACCTATAGAGATGTTACAGAATCTTTTTTTTTTTTTTTGTTGCACTGTAGTATCGAAACATGATTCAGTCAACACAGGGGGAAAGACCTGTTATTATAGGGCGTAATATAGCTGCAATTATGGACCTTTTTATGATCTCAAAAATATCACCAGAGTTGAGAGTCCATGTCAGTGTATACTGTGTAATTATAGATAATGTGTCAGACTAAAAACGCCCACTGGGGTCACCTGATGGGTTTCTAGCTTGATCCAGGGGCCAGCCTTTGTTTTTTTTTTTTTAATCGTGGTTCCAATATCTTTAGTTTGTAGAAGCAAGAAAAATACAGGTAATAACGATTTTATTTCATTTGCGATCTGGTGTAACTGGCTTTCCCATGAGTTTTTATTTTTTTAGTCGTAGCATCCTAGGCCTTAAGATCAAAGAACGAAGGAAGATGTAACTACCTAGATAAATGCCACTGTGCGACTTTGCTGTGAGATCAGGTATAGGATTCCTAAAAAAAAAAGTACAATTCTCACAGCCCTTAACAGGATGGACTTGAATTAAAAAAAAACGAAAAAAAACGAAGAAAAAAAAAAAAATCTCGTCTTAACGTGAATACAGGGTATAAATGAAGGAGATGGGTGCTGAGAAAGCACAGGGGATAGAGTGTTTGCTTAACTCTTTGTCTGCCCATCTCCCTTGCACTTACAGTTTACATGCAGAGCCCAAGTCCCTCCATTCTGGAGACTGCCAGGCTTGTGTGATCTTGTACACACAAATATTTATTATTGCTGCTTTTGAAAGCCGGTGAAAATATTTTCTTTTTTTTTTTTTTCTTTTGTATTATTTATCCAGCATAATAACCTATTTATAAAAAAAAAAATAAGACGAAATTGTACTTTTTTGGTATTTACTTGTTATAAGAAAAAAAAACTTGTGTTTTCCA
                                                  Xt7.1-CHK-1008237222                                                                                      CCCCCAAATTGACCCATTTGTGATTAAGAAGTAATACCCATTTCTGACTACAGAGGGGGCTCAGCCCGACCATCACCTTGGGGGAACAATAAAACATTTCCACTTGATCTATTTTTCTTAAACATTTTTTTAAACCTATAGAGATGTTACAGAATCTTTTTTTTTTTTTTTGTTGCACTGTAGTATCGAAACATGATTCAGTCAACACAGGGGGAAAGACCTGTTATTATAGGGCGTAATATAGCTGCAATTATGGACCTTTTTATGATCTCAAAAATATCACCAGAGTTGAGAGTCCATGTCAGTGTATACTGTGTAATTATAGATAATGTGTCAGACTAAAAACGCCCACTGGGGTCACCTGATGGGTTTCTAGCTTGATCCAGGGGCCAGCCTTTGTTTTTTTTTTTTTAATCGTGGTTCCAATATCTTTAGTTTGTAGAAGCAAGAAAAATACAGGTAATAACGATTTTATTTCATTTGCGATCTGGTGTAACTGGCTTTCCCATGAGTTTTTATTTTTTTAGTCGTAGCATCCTAGGCCTTAAGATCAAAGAACGAAGGAAGATGTAACTACCTAGATAAATGCCACTGTGCGACTTTGCTGTGAGATCAGGTATAGGATTCCTAAAAAAAAAAGTACAATTCTCACAGCCCTTAACAGGATGGACTTGAATTAAAAAAAAACGAAAAAAAACGAAGAAAAAAAAAAAAATCTCGTCTTAACGTGAATACAGGGTATAAATGAAGGAGATGGGTGCTGAGAAAGCACAGGGGATAGAGTGTTTGCTTAACTCTTTGTCTGCCCATCTCCCTTGCACTTACAGTTTACATGCAGAGCCCAAGTCCCTCCATTCTGGAGACTGCCAGGCTTGTGTGATCTTGTACACACAAATATTTATTATTGCTGCTTTTGAAAGCCGGTGAAAATATTTTCTTTTTTTTTTTTTTCTTTTGTATTATTTATCCAGCATAATAACCTATTTATAAAAAAAAAAATAAGACGAAATTGTACTTTTTTGGTATTTACTTGTTATAAGAAAAAAAAACTTGTGTTTTCCATGTCAT
                                                      consensus depths                                                                                     2     3     2     3     2     3     2     3     2     4     2     4     2     4     2     4     2     4     2     5     2     5     2     5     2     5     2     5     4     5     4     5     4     5     4     5     5     5     5     5     5     5     5     5     5     5     5     5     5     5     5     5     5     5     5     5     5     5     5     5     5     5     5     5     5     6     5     7     7     7     6     7     7     7     7     7     7     7     7     7     7     7     7     7     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     8     6     8     3     8     3     8     3     8     3     5     2     4     4     4     2     4     2     4     3     5     3     5     3     5     3     5     3     5     3     5     3     5     3     5     3     5     3     5     3     5     3     5     3     4     3     4     3     4     3     4     3     4     3     4     2     4     2     4     2     4     4     4     3     4     3     4     3     4     3     4     3     4
                                                      Xt7.1-XZT57213.5                                                                                               TGA------------TAA---------------------------------------------------------------------------------------------------------------TAG---------------------------------------TAG---------ATG---------------------------------------------------------ATG---------ATG------------------------------------------------------------------------TAA------------------------------------TGA------------------------------TAA------------------TAG------------------------------------------------------------------------ATG---------------------------------------------------------ATGTAA---------TAAATG------------------------------------------------------------------------------------TGA------------------------------------------------TAA---------------TAAATG------ATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA------------------------------------------------------------TAA---------TAA
                                                                   ORF                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              [ open reading frame                                                                                                                                                               ]
  5  -1   2       bld Spl1      out                        CABK2884.5p CAGCCAGCACCATGCACCTTGTGACCCCCACCCAACCTACACAGAGCTCTCAGCCCACCACCAGGGCAGGATCCAGGAAGCCCCCAAATTGACCCATTTGTGATTAAGAAGTAATACCCATTTCTGACTACAGAGGGCGCTCAGCCCGACCATCACCTCGGGGGAACAATAAAACATTTCCACTTGATCTATTTTTCTTAAACATTTTTTTAAACCTATAGAGATGTTACAGAATCTTTTTTTTTTTTTTTTTTTTGTTGCACTGTAGTATCGAAACATGATTCAGTCAACACAGGGGGAAAGACCTGTTATTATAGGGCGTAATATAGCTGCAATTATGGACCTTTTTATGATCTCAAAAATATCACCAGAGTTGAGAGTCCATGTCAGTGTATACTGTGTAATTATAGATAATGTGTCAGACTAAAAACGCCCACTGGGGTCACCTGATGGGTTTCTAGCTTGATCCAGGGGCCAGCCTTTGTTTTTTTTTTTTTAATCGTGGTTCCAATATCTTTAGTTTGTAGAAGCAAGAAAAATACAGGTAATAACGATTTTATTTCATTTGCGATCTGGTGTAACTGGCTTTCCCATGAGTTTTTATTTTTTTAGTCGTAGCATCCTAGGCCTTAAGATCAAAGAACGAAGGAAGATGTAACTACCTAGATAAATGCCACTGTGCGACTTTGCTGTGAGATCAGGTATAGGATTCCTAAAAAAAAAAAGTACAATTCTCACAGCCCTTAACAGGATGGACTTGAATT
  3   1   2       bld Tad5 FL   out                        XZT30935.3p                                                                    AGGGCAGGATCCAGGAAGCCCCCAAATTGACCCATTTGTGATTAAGAAGTAATACCCATTTCTGACTACAGAGGGGGCTCAGCCCGACCATCACCTTGGGGGAACAATAAAACATTTCCACTTGATCTATTTTTCTTAAACATTTTTTTAAACCTATAGAGATGTTACAGAATCTTTTTTTTTTTTTTTGTTGCACTGTAGTATCGAAACATGATTCAGTCAACACAGGGGGAAAGACCTGTTATTATAGGGCGTAATATAGCTGCAATTATGGACCTTTTTATGATCTCAAAAATATCCCCAGAGTTGAGAGTCCATGTCAGTGTATACTGTGTAATTATAGATAATGTGTCAGACTAAAAACGCCCACTGGGGTCCCCTGATGGGTTTCTAGCTTGATCCAGGGGCCAGCCTTTGTTTTTTTTTTTTTAATCGGGGTTCCAATATCTTTAGTTTGTAGAAGCAAGAAAAATACAGGTAATAACGATTTTATTTCATTTGCGATCTGGTGTAACTGGCTTTCCCATGAGTTTTTATTTTTTTAGTCGTAGCATCCTAGGCCTTAAGATCAAAGAACGAAGGAAGATGTAACTACCTAGATAAATGCCCCTGTGCGACTTTGCTGTGAGATCAGGTATAGGATTCCTAAAAAAAAAAAGTACAATTCTCACAGCCCTTAACAGGATGGACTTGATTT
  3   1   2       bld Neu  FL   ?                     TNeu134e01.q1kT7                                                                                AGGAAGCCCCCAAATTGACCCATTTGTGATTAAGAAGTAATACCCATTTCTGACTACAGAGGGCGCTCAGCCCGACCATCACCTCGGGGGAACAATAAAACATTTCCACTTGATCTATTTTTTTTAAACATTTTTTTAAACCTATAGAGATGTTACAGAATCTTTTTTTTTTTTTTTGTTGCACTGTAGTATCGAAACATGATTCAGTCAACACAGGGGGAAAGACCTGTTATTATAGGGCGTAATATAGCTGCAATTATGGACCTTTTTATGATCTCAAAAATATCACCAGAGTTGAGAGTCCATGTCAGTGTATACTGTGTAATTATAGATAATGTGTCAGACTAAAAACGCCCACTGGGGTCACCTGATGGGTTTCTAGCTTGATCCAGGGGCCAGCCTTTGTTTTTTTTTTTTTAATCGTGGTTCCAATATCTTTAGTTTGTAGAAGCAAGAAAAATACAGGTAATAACGATTTTATTTCATTTGCGATCTGGTGTAACTGGCTTTCCCATGAGTTTTTATTTTTTTAGTCGTAGCATCCTAGGCCTTAAGATCAAAGAACGAAGGAAGATGTAACTACCTAGATAAATGCCACTGTGCGACTTTGCTGTGAGATCAGGTATAGGATTCCTAAAAAAAAAAAGTACAATTCTCACAGCCCTTAACAGGATGGACTTGAATTAAAAAAAAAAAAAAAAAAA
  5   1   2       bld Tad5      in                         XZT57213.5p                                                                                                                       CCATTTCTGACTACAGAGGGCGCTCAGCCCGACCATCACCTCGGGGGAACAATAAAACATTTCCACTTGATCTATTTTTCTTAAACATTTTTTTAAACCTATAGAGATGTTACAGAATCTTTTTTTTTTTTGTTTTTTGTTGCACTGTAGTATCGAAACATGATTCAGTCAACACAGGGGGAAAGACCTGTTATTATAGGGCGTAATATAGCTGCAATTATGGACCTTTTTATGATCTCAAAAATATCACCAGAGTTGAGAGTCCATGTCAGTGTATACTGTGTAATTATAGATAATGTGTCAGACTAAAAACGCCCACTGGGGTCACCTGATGGGTTTCTAGCTTGATCCAGGGGCCAGCCTTTGTTTTTTTTTTTTTAATCGTGGTTCCAATATCTTTAGTTTGTAGAAGCAAGAAAAATACAGGTAATAACGATTTTATTTCATTTGCGATCTGGTGTAACTGGCTTTCCCATGAGTTTTTATTTTTTTAGTCGTAGCATCCTAGGCCTTAAGATCAAAGAACGAAGGAAGATGTAACTACCTAGATAAATGCCACTGTGCGAATTTGCTGTGAGATCAGGTATAGGATTCCTAAAAAAAAAAAAGTACAATTCTCACAGCCCTTAACAGGATGGACTTGAATTAAAAAAAAAACGAAAAAAACGAAGGAAAAAAAAAAAATCTCGTCTTAACGTGAATACAGGGTATAAATGAAGGAGATGGGTGCTGAGAAAGCACAGGGGATAGAGTGTTTGCTTAACTCTTTGTCTGCCCATCTCCCTTGCACTTACAGTTTACATGCAGAGCCCAAGTCCCTCCATTCTGGAGACTGCCCAGGCTGTGTGATCTTGTA
  5   1   2       bld Tbd0      in                     NISC_nl15d03.y1                                                                                                                                                                                      TTCCACTTGATCTATTTTTCTTAAACATTTTTTTAAACCTATAGAGATGTTACAGAATCTTTTTTTTTTTTTTTGTTGCACTGTAGTATCGAAACATGATTCAGTCAACACAGGGGNGAAAGACCTGTTATTATAGGGCGTAATATAGCTGCAATTATGGACCTTTTTATGATCTCAAAAATATCACCAGAGTTGAGAGTCCATGTCAGTGTATACTGTGTAATTATAGATAATGTGTCAGACTAAAAACGCCCACTGGGGTCACCTGATGGGTTTCTAGCTTGATCCAGGGGCCAGCCTTTGTTTTTTTTTTTTTAATCGTGGTTCCAATATCTTTAGTTTGTAGAAGCAAGAAAAATACAGGTAATAACGATTTTATTTCATTTGCGATCTGGTGTAACTGGCTTTCCCATGAGTTTTTATTTTTTTAGTCGTAGCATCCTAGGCCTTAAGATCAAAGAACGAAGGAAGATGTAACTACCTAGATAAATGCCACTGTGCGACTTTGCTGTGAGATCAGGTATAGGATTCCTAAAAAAAAAAGTACAATTCTCACAGCCCTTAACAGGATGGACTTGAATTAAAAAAAAACG
  5   1   2       bld Spl1      in                         CABK2105.5p                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CATCGATTCGCCGCCTAGCCTCGAGTTTTTTTTTTTTTAATCGTGGTTCCATATCTTTAGTTTGTAGAAGCAAGAAAAATACAGGTAATAACGATTTTATTTCATTTGCGATCTGGTGTAACTGGCTTTCCCATGAGTTTTTATTTTTTTAGTCGTAGCATCCTAGGCCTTAAGATCAAAGAACGAAGGAAGATGTAACTACCTAGATAAATGCCACTGTGCGACTTTGCTGTGAGATCAGGTATAGGATTCCTAAAAAAAAAAGTACAATTCTCACAGCCCTTAACAGGATGGACTTGAATTAAAAAAAAACGAAAAAAAACGAAGAAAAAAAAAAAAATCTCGTCTTAACGTGAATACAGGGTATAAATGAAGGAGATGGGTGCTGAGAAAGCACAGGGGATAGAGTGTTTGCTTAACTCTTTGTCTGCCCATCTCCCTTGCACTTACAGTTTACATGCAGAGCCCAAGTCCCTCCATTCTGGAGACTGCCAGGCTTGTGTGATCTTGTACACACAAATATTTATTATTGCTGCTTTTGAAAGCCGGTGAAAATATTTTCTTTTTTTTTTTTTTCTTTTGTATTATTTATCCAGCATAATAACCTATTTATAAAAAAAAAAATAAGACGAAATTGTACTTTTTTGGTATTTACTTGTTATAAGAAAAAAAAACTTGTGTTTTCCATGTCATTGTAAAAAAAAAAAAAAAAAA
  3   1   2      seed Spl1      in                         CABK2105.3p                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CCGCCTAGCCTCGAGTTTTTTTTTTTTTAATCGTGGTTCCAATATCTTTAGTTTGTAGAAGCAAGAAAAATACAGGTAATAACGATTTTATTTCATTTGCGATCTGGTGTAACTGGCTTTCCCATGAGTTTTTATTTTTTTAGTCGTAGCATCCTAGGCCTTAAGATCAAAGAACGAAGGAAGATGTAACTACCTAGATAAATGCCACTGTGCGACTTTGCTGTGAGATCAGGTATAGGATTCCTAAAAAAAAAAGTACAATTCTCACAGCCCTTAACAGGATGGACTTGAATTAAAAAAAAACGAAAAAAAACGAAGAAAAAAAAAAAAATCTCGTCTTAACGTGAATACAGGGTATAAATGAAGGAGATGGGTGCTGAGAAAGCACAGGGGATAGAGTGTTTGCTTAACTCTTTGTCTGCCCATCTCCCTTGCACTTACAGTTTACATGCAGAGCCCAAGTCCCTCCATTCTGGAGACTGCCAGGCTTGTGTGATCTTGTACACACAAATATTTATTATTGCTGCTTTTGAAAGCCGGTGAAAATATTTTCTTTTTTTTTTTTTTCTTTTGTATTATTTATCCAGCATAATAACCTATTTATAAAAAAAAAAATAAGACGAAATTGTACTTTTTTGGTATTTACTTGTTATAAGAAAAAAAAACTTGTGTTTTCCATGTCATTGT
  3   1   2       bld Tad5      in                         XZT57213.3p                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TAACGGGCTTTCCCATGAGTTTTTATTTTTTTAGTCGTAGCATCCTAGGCCTTAAGATCAAAGAACGAAGGAAGATGTAACTACCTAGATAAATGCCACTGTGCGAATTTGCTGTGAGATCAGGTATAGGATTCCTAAAAAAAAAAAAGTACAATTCTCACAGCCCTTAACAGGATGGACTTGAATTAAAAAAAAAACGAAAAAAACGAAGGAAAAAAAAAAAATCTCGTCTTAACGTGAATACAGGGTATAAATGAAGGAGATGGGTGCTGAGAAAGCACAGGGGATAGAGTGTTTGCTTAACTCTTTGTCTGCCCATCTCCCTTGCACTTACAGTTTACATGCAGAGCCCAAGTCCCTCCATTCTGGAGACTGCCAGGCTTGTGTGATCTTGTACACACAAATATTTATTATTGCTGCTTTTGAAAGCCGGTGAAAATATTTTCTTTTTTTTTTTTTTTTTCTTTTGTATTATTTATCCAGCATAATAACCTATTTATAAAAAAAAAAAAATAAGACGAAATTGTACTTTTTTGGTATTTACTTGTTATAAGAAAAAAAACTTGTGTTTTCCATGTCATTGTAAAAAAAAAAATGCCTATTTAATTCTAGTATTTTAGAGAGATGTTTAGTTTTGTTTCCTTGTACTTCGGATAATGTAATCCTGAGGCATGACAAGCCGCCCAACTGTTTAGCCTCCATATGAATAGATAGGCTGCACAAAACCCTCTGGAAGTTCTTCTTTGTAGGTCAATTTTCATTTGAAAAAAAACTGTATGTTGGAAAAAAAAACACAACTCTGTAATAAAATTTCTGTTATAAAAAAAAAAAAAAAGG
  3   1   2      skin Tbd0      in                     NISC_nl15d03.x1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGGGTATAAATGAAGGAGATGGGTGCTGAGAAAGCACAGGGGATAGAGTGTTTGCTTAACTCTTTGTCTGCCCATCTCCCTTGCACTTACAGTTTACATGCAGAGCCCAAGTCCCTCCATTCTGGAGACTGCCAGGCTTGTGTGATCTTGTACACACAAATATTTATTATTGCTGCTTTTGAAAGCCGGTGAAAATATTTTCTTTTTTTTTTTTTCTTTTGTATTATTTATCCAGCATAATAACCTATTTATAAAAAAAAAAAATAAGACGAAATTGTACTTTTTTGGTATTTACTTGTTATAAGAAAAAAAAACTTGTGTTTTCCATGTCATTGTAAAAAAAAAAAATGCCTATTTAATTCTAGTATTTTAGAGAGATGTTTAGTTTTGTTTCCTTGTACTTCGGATAATGTAATCCTGAGGCATGACAAGCCGCCCAACTGTTTAGCCTCCATATGAATAGATAGGCTGCACAAAACCCTCTGGAAGTTCTTCTTTGTAGGTCAATTTTCATTTGAAAAAAAACTGTATGTTGGAAAAAAACACAACTCTGTAATAAAATTTCTGTTATAAAAAAAAAAAAAAAAAAAG

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