Gurdon Institute Xenopus tropicalis EST Database
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Application in use by Guest User - 28 Feb 2021 - database INFO-PUBLIC
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By Clone or Sequence Name
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Related Clusters
(none)
This cluster: approximate FL confidence score = 0%
1012091309 Xt7.1-CAAQ5644.3 - 5 ESTs
.......-210......-200......-190......-180......-170......-160......-150......-140......-130......-120......-110......-100......-90.......-80.......-70.......-60.......-50.......-40.......-30.......-20.......-10.......0.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760.......770.......780.......790.......800.......810.......820.......830.......840.......850.......860.......870.......880.......890.......900.......910.......920.......930.......940.......950.......960.......970.......980.......990.......1000......1010......1020......1030......1040......1050.
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Xt7.1-CAAQ5644.3 GCTACAAAATAACTGGTTTAGCCAGGATTTTACCTTCTTGTGATCGACAGACACTCTGCAGCACAGCAAAGCTCCATCTGGACTGCACTACGTACAGATGGTATGCTGGGCCTCAACTCAGCTCAGCGTTTGACCGCAATAAAGGCCTCTATAACAGAGCAGCTTTCCATTCTGTACAACCAAAGGTGGATAGAGTAATGTCCATGTTGTACTACACTTTGTTTATAGCAATTCTCATCAGCGTACAGGCTGCACCAAAGACCAAAGACCATGCCCCAGCAAGGTCTTCAGCAAAATCCCGCATTCCTCATCACACACATCGAACTAAGTCTCTTCACCATCACCATGGAAAACTAGAGGCAAAGGAGCCTTCGTACTTTCACAATGTCACAGTGGACCCTAAACTTTTTAGAAAAAGGAAATTTCGATCTCCACGAGTTTTGTTTAGTACTCAACCTCCTCCATTGTCCGAGGACATACGAAATTTGCAATACTTGGACGATGAGGAATCTCTTAACAAAACCATCCGGTCTAAGAGGACAGTGCATCCGGTTCTTCACCGAGGGGAGTACTCTGTATGTGACAGCGTCAGTATGTGGGTTGGGGAAAAGACTACAGCCACCGACATCAAGGGCAAGGAGGTGACTGTGTTGGGAGAAGTAAATATAAACAATAGTGTTTTCAAACAGTACTTTTTTGAGACCAAATGCAGGGACCCAAAGCCAGTTTCAAGCGGATGCCGTGGGATTGATGCAAAGCATTGGAACTCTTATTGTACCACCACGCACACCTTTGTCAAAGCATTAACAATGGAAGGGAAGCAAGCAGCATGGAGATTCATACGGATTGATACAGCATGTGTCTGTGTGCTAAGCAGGAAAGGTCGAACCTAAGTGAAAACATTCTTGCCATCCCATCTTCTCCCCACCCCTACCT
Xt7.1-CHK-1008243470 AAATAACTGGTTTAGCCAGGATTTTACCTTCTTGTGATCGACAGACACTCTGCAGCACAGCAAAGCTCCATCTGGACTGCACTACGTACAGATGGTATGCTGGGCCTCAACTCAGCTCAGCGTTTGACCGCAATAAAGGCCTCTATAACAGAGCAGCTTTCCATTCTGTACAACCAAAGGTGGATAGAGTAATGTCCATGTTGTACTACACTTTGTTTATAGCAATTCTCATCAGCGTACAGGCTGCACCAAAGACCAAAGACCATGCCCCAGCAAGGTCTTCAGCAAAATCCCGCATTCCTCATCACACACATCGAACTAAGTCTCTTCACCATCACCATGGAAAACTAGAGGCAAAGGAGCCTTCGTACTTTCACAATGTCACAGTGGACCCTAAACTTTTTAGAAAAAGGAAATTTCGATCTCCACGAGTTTTGTTTAGTACTCAACCTCCTCCATTGTCCGAGGACATACGAAATTTGCAATACTTGGACGATGAGGAATCTCTTAACAAAACCATCCGGTCTAAGAGGACAGTGCATCCGGTTCTTCACCGAGGGGAGTACTCTGTATGTGACAGCGTCAGTATGTGGGTTGGGGAAAAGACTACAGCCACCGACATCAAGGGCAAGGAGGTGACTGTGTTGGGAGAAGTAAATATAAACAATAGTGTTTTCAAACAGTACTTTTTTGAGACCAAATGCAGGGACCCAAAGCCAGTTTCAAGCGGATGCCGTGGGATTGATGCAAAGCATTGGAACTCTTATTGTACCACCACGCACACCTTTGTCAAAGCATTAACAATGGAAGGGAAGCAAGCAGCATGGAGATTCATACGGATTGATACAGCATGTGTCTGTGTGCTAAGCAGGAAAGGTCGAACCTAAGTGAAAACATTCTTGCCATCCCATCTTCTCCCCACCCCTACCTCAGCCT
consensus depths 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 3 2 3 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 3 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3
BLH MIN 98 60
PROTEIN --- Sp ---- 1e-011 NP_001073024.1 neurotrophin 5 [Strongylocentrotus purpuratus] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------========================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
PROTEIN --- Bf ---- 2e-019 ABE27004.1 prepro-neurotrophin [Branchiostoma floridae] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------====================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
PROTEIN --- Xt ---- 1e-043 NP_001016370.1 neurotrophin-3 [Xenopus tropicalis] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------=======================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
PROTEIN === ?? ==== 3e-044 NP_001084090.1 neurotrophin-3 [Xenopus laevis] ==============================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
PROTEIN --- Dr ---- 3e-048 NP_954680.1 nerve growth factor, beta polypeptide [Danio rerio] ----------------------------============================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
PROTEIN === Hs ==== 2e-080 NP_002497.2 nerve growth factor, beta polypeptide precursor [Homo sapiens] ==================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
PROTEIN --- Mm ---- 1e-084 NP_038637.1 nerve growth factor, beta [Mus musculus] ---------------===============================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
PREDICTED = Gg ==== 6e-088 XP_418016.2 PREDICTED: similar to Beta-nerve growth factor precursor (Beta-NGF) [Gallus gallus] =============================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
PROTEIN === Xl ==== 6e-132 CAA39249.1 nerve growth factor prepropeptide [Xenopus laevis] ====================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
Xt7.1-CAAQ5644.3 ATG---ATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG------------------------------------------------------------------------------TAA
ORF ... open reading frame ]
5 1 2 bld BrSp in EC2BBA33BE02.g1 GGGAGAACAGACATGTGAATGGCTCAGCTGGGTTTCAAAGCATTTTGTGGACTAGGATACAAGAGGCTACAAAATAACTGGTTTAGCCAGGATTTTACCTTCTTGTGATCGACAGACACTCTGCAGCACAGCAAAGCTCCATCTGGACTGCACTACGTACAGATGGTATGCTGGGCCTCAACTCAGCTCAGCGTTTGACCGCAATAAAGGCCTCTATAACAGAGCAGCTTTCCATTCTGTACAACCAAAGGTGGATAGAGTAATGTCCATGTTGTACTACACTTTGTTTATAGCAATTCTCATCAGCGTACAGGCTGCACCAAAGACCAAAGACCATGCCCCAGCAAGGTCTTCAGCAAAATCCCGCATTCCTCATCACACACATCGAACTAAGTCTCTTCACCATCACCATGGAAAACTAGAGGCAAAGGAGCCTTCGTACTTTCACAATGTCACAGTGGACCCTAAACTTTTTAGAAAA
5 1 2 seed Hrt1 in CAAQ5644.5p GCTACAAAATAACTGGTTTAGCCAGGATTTTACCTTCTTGTGATCGACAGACACTCTGCAGCACAGCAAAGCTCCATCTGGACTGCACTACGTACAGATGGTATGCTGGGCCTCAACTCAGCTCAGCGTTTGACCGCAATAAAGGCCTCTATAACAGAGCAGCTTTCCATTCTGTACAACCAAAGGTGGATAGAGTAATGTCCATGTTGTACTACACTTTGTTTATAGCAATTCTCATCAGCGTACAGGCTGCACCAAAGACCAAAGACCATGCCCCAGCAAGGTCTTCAGCAAAATCCCGCATTCCTCATCACACACATCGAACTAAGTCTCTTCACCATCACCATGGAAAACTAGAGGCAAAGGAGCCTTCGTACTTTCACAATGTCACAGTGGACCCTAAACTTTTTAGAAAAAGGAAATTTCGATCTCCACGAGTTTTGTTTAGTACTCAACCTCCTCCATTGTCCGAGGACATACGAAATTTGCAATACTTGGACGATGAGGAATCTCTTAACAAAACCATCCGGTCTAAGAGGACAGTGCATCCGGTTCTTCACCGAGGGGAGTACTCTGTATGTGACAGCGTCAGTATGTGGGTTGGGGAAAAGACTACAGCCACCGACATCAAGGGCAAGGAGGTGACTGTGTTGGGAGAAGTAAATATAAACAATAGTGTTTTCAAACAGTACTTTTTTGAGACCAAATGCAGGGACCCAAAGCCAGTTTCAAGCGGATGCCGTGNGATTGATGCAAAGCATTGGAACTCTTATTGTACCACCACGCACACCTTTGTCAAAGCATTAACAATGGA
5 1 2 bld Liv1 PIPE CAAR2683.5p TTAGCCAGGATTTTACCTTCTTGTGATCGACAGACACTCTGCAGCACAGGTGGATAGAGTAATGTCCATGTTGTACTACACTTTGTTTATAGCAATTCTCATCAGCGTACAGGCTGCACCAAAGACCAAAGACCATGCCCCAGCAAGGTCTTCAGCAAAATCCCGCATTCCTCATCACACACATCGAACTAAGTCTCTTCACCATCACCATGGAAAACTAGAGGCAAAGGAGCCTTCGTACTTTCACAATGTCACAGTGGACCCTAAACTTTTTAGAAAAAGGAAATTTCGATCTCCACGAGTTTTGTTTAGTACTCAACCTCCTCCATTGTCCGAGGACATACGAAATTTGCAATACTTGGACGATGAGGAATCTCTTAACAAAACCATCCGGTCTAAGAGGACAGTGCATCCGGTTCTTCACCGAGGGGAGTACTCTGTATGTGACAGCGTCAGTATGTGGGTTGGGGAAAAGACTACAGCCACCGACATCAAGGGCAAGGAGGTGACTGTGTTGGGAGAAGTAAATATAAACAATAGTGTTTTCAAACAGTACTTTTTTGAGACCAAATGCAGGGACCCAAAGCCAGTTTCAAGCGGATGCCGTGGGATTGATGCAAAGCATTGGAACTCTTATTGTACCACCACGCACACCTTTGTCAAAGCATTAACAATGGAAGGGAAGCAAGCAGCATGGAGATTCATACGGATTGATACAGCATGTGTCTGTGTGCTAAGCAGGAAAGGTCGAACCTAAGTGAAAACATTCTTGCCATCCCATCTTCTCCCACCCCTACCTCAGCCTGTAAATTATTTTAAATTATATGGACTGCATGGTATATTTATAGTTTATACTGCAAAAAGAGAGACATTATTTATTAATAACAATTTTTAAA
3 1 2 bld Hrt1 in CAAQ5644.3p TGTACACCAAAGGTGGATAGAGTAATGTCCATGTTGTACTACACTTTGTTTATAGCAATTCTCATCAGCGTACAGGCTGCACCAAAGACCAAAGACCATGCCCCAGCAAGGTCTTCAGCAAAATCCCGCATTCCTCATCACACACATCGAACTAAGTCTCTTCACCATCACCATGGAAAACTAGAGGCAAAGGAGCCTTCGTACTTTCACAATGTCACAGTGGACCCTAAACTTTTTAGAAAAAGGAAATTTCGATCTCCACGAGTTTTGTTTAGTACTCAACCTCCTCCATTGTCCGAGGACATACGAAATTTGCAATACTTGGACGATGAGGAATCTCTTAACAAAACCATCCGGTCTAAGAGGACAGTGCATCCGGTTCTTCACCGAGGGGAGTACTCTGTATGTGACAGCGTCAGTATGTGGGTTGGGGAAAAGACTACAGCCACCGACATCAAGGGCAAGGAGGTGACTGTGTTGGGAGAAGTAAATATAAACAATAGTGTTTTCAAACAGTACTTTTTTGAGACCAAATGCAGGGACCCAAAGCCAGTTTCAAGCGGATGCCGTGGGATTGATGCAAAGCATTGGAACTCTTATTGTACCACCACGCACACCTTTGTCAAAGCATTAACAATGGAAGGGAAGCAAGCAGCATGGAGATTCATACGGATTGATACAGCATGTGTCTGTGTGCTAAGCAGGAAAGGTCGAACCTAAGTGAAAACATTCTTGCCATCCCATCTTCTCCCCACCCCTACCTCAGCCTGTAAATTATTTTAAATTATATGGACTGCATGGTATATTTATAGTTTATACTGCAAAAAGAGAGACATTATTTATTAATAAACAATTTTAAAATTCAAAAAGCCTCTCGCCCTA
3 1 2 bld BrSp in EC2BBA33BE02.b1 AGTATGTGGGTTGGGGTAAAGACTACAGCCTCCGACATCAAGGGCAAGGAGGTGACTGTGTTGGGAGAAGTAAATATAAACAATAGTGTTTTCAAACAGTACTTTTTTAAAAAAAAATGCAGGGACCCAAAGCCAGTTTCAAGCGGATGCCGGGGGATTGATGCAAAGCATTGGAACTCTTATTGTACCCCCACGCACACCTTTGTCAAAGCATTAACAATGGAAGGGAAGCAAGCAGCATGGAGATTCATACGGATTGATACAGCATGTGTCTGTGTGCTAAGCAGGAAAGGTCGAACCTAAATAAAAACATTCTTGCCATCCCATCTTCTCCCCACCCCTACCTCAGCCTGTA
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