Gurdon Institute Xenopus tropicalis EST Database
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Application in use by Guest User - 18 Jan 2021 - database INFO-PUBLIC
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By Clone or Sequence Name
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Related Clusters
(none)
This cluster: approximate FL confidence score = 87%
1012095824 Xt7.1-CCAX4917.5 - 4 ESTs
-1000.....-990......-980......-970......-960......-950......-940......-930......-920......-910......-900......-890......-880......-870......-860......-850......-840......-830......-820......-810......-800......-790......-780......-770......-760......-750......-740......-730......-720......-710......-700......-690......-680......-670......-660......-650......-640......-630......-620......-610......-600......-590......-580......-570......-560......-550......-540......-530......-520......-510......-500......-490......-480......-470......-460......-450......-440......-430......-420......-410......-400......-390......-380......-370......-360......-350......-340......-330......-320......-310......-300......-290......-280......-270......-260......-250......-240......-230......-220......-210......-200......-190......-180......-170......-160......-150......-140......-130......-120......-110......-100......-90.......-80.......-70.......-60.......-50.......-40.......-30.......-20.......-10.......0.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760.......770.......780.......790.......800.......810.......820.......830.......840.......850.......860.......870.......880.......890.......900.......910.......920.......930.......940.......950.......960.......970.......980.......990.......1000......1010......1020......1030......1040......1050......1060......1070......1080......1090......1100......1110......1120......1130......1140......1150......1160......1170......1180......1190......1200......1210......1220......1230......1240......1250......1260......1270......1280......1290......1300......1310.
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Xt7.1-CCAX4917.5 ATTGGAAGGATTTCCCCCCGTGTAGCCTCACATGGACTGTGCCCCTAGCCCTGCTCTGCTGTGAGCCAGCGGCCCTACTTATAGGATGAACTGTCTCGTTTATGCTCTAGGATCCCTTTTCCTTCTGAGTGGGCTCCTCCTCCCCAGCTCTGAAGGGAAGAAGAAGGTTAGTGGATCACAGGGAGCCATTCCTCCCCCTGACAAAGGGCAGCCCAATGACTCTGAACAAGGTCAAACACAGCCAGGAGGCCGGGGCCGAGTTAAAGGGAAGGGACAAGCACTAGCAGCTGAAGAAGTGCTCGAGTCCAGTCAAGAAGCTCTACATATCACTGAACGCAAGTATCTAAAGAGGGACTGGTGTAAGACTCAGCCCTTAAAGCAAACTATTCATGAGGATGGGTGTAACAGTCGTACCATCATCAACCGCTTTTGCTATGGGCAATGCAACTCCTTCTATATCCCCCGTCACATACGCAGGGAGGAGGGCTCCTTTCAATCCTGCTCCTTCTGCAAACCTAAAAAATTTACCACAATGGTGGTCACCCTGAACTGTCCAGAGCTTCAGCCTCCCACAAAGAAGAAGAGAATCACACGTGTCAAGCAATGTCGCTGCATCTCCATAGACCTGGACTAATGGTCCCCGGGCCTGTGAGCACTAGAATAATGGGAGCTTCGCACTTCGTATTCATACCATTTCTGTCTGTGCCAAGACCAGCAAACCGTGGCCCTCACAGACGTTCAGTTGTGTCCGAGCCACTTTATGCTTTCAGAGAAAAACAGCTCATGCTACTACACCATAGGCAGGAATCCGAACAAGCAATAAATATATAGATTTAGTCCTTCTGTTGAACTATCCTAATCAGTGTTGGGTTCCTTATATTTTCTAGGGAATATGGAGGCCTGCAAAGCGAGTATCCATGTATACATTGTGTACATATATATTATTTATTCTCACGTGTGTGTTTCTGTGCACATGAAAGAGCATGAGGGAAGGAAGCCAAGGCTGTTAATATCTGGACTTGCTGTTAAGCACTAGGAGTTAATGAATTGTGCATGTTACTGGCATGTAGCAGTGAATGGCCACTGCAGGAGACCCATTATTAAGGCAACATGTAACTTTCTGACTTTGCAAGGTTCACTGTGGGTAAACATGCCTTAAGAACAATACATTCTCTTTTCCATGGGTTAATCTGCCAGGAACCAGAAAAATACGGCAGTGTATAAATTCAGTTCGAAGACAGAGGATGCCATGTTAGGCATGTACAGTCTGATCATCTAAATATATCTTCTCAAACT
Xt7.1-CHK-1008244079 AGGATTTCCCCCCGTGTAGCCTCACATGGACTGTGCCCCTAGCCCTGCTCTGCTGTGAGCCAGCGGCCCTACTTATAGGATGAACTGTCTCGTTTATGCTCTAGGATCCCTTTTCCTTCTGAGTGGGCTCCTCCTCCCCAGCTCTGAAGGGAAGAAGAAGGTTAGTGGATCACAGGGAGCCATTCCTCCCCCTGACAAAGGGCAGCCCAATGACTCTGAACAAGGTCAAACACAGCCAGGAGGCCGGGGCCGAGTTAAAGGGAAGGGACAAGCACTAGCAGCTGAAGAAGTGCTCGAGTCCAGTCAAGAAGCTCTACATATCACTGAACGCAAGTATCTAAAGAGGGACTGGTGTAAGACTCAGCCCTTAAAGCAAACTATTCATGAGGATGGGTGTAACAGTCGTACCATCATCAACCGCTTTTGCTATGGGCAATGCAACTCCTTCTATATCCCCCGTCACATACGCAGGGAGGAGGGCTCCTTTCAATCCTGCTCCTTCTGCAAACCTAAAAAATTTACCACAATGGTGGTCACCCTGAACTGTCCAGAGCTTCAGCCTCCCACAAAGAAGAAGAGAATCACACGTGTCAAGCAATGTCGCTGCATCTCCATAGACCTGGACTAATGGTCCCCGGGCCTGTGAGCACTAGAATAATGGGAGCTTCGCACTTCGTATTCATACCATTTCTGTCTGTGCCAAGACCAGCAAACCGTGGCCCTCACAGACGTTCAGTTGTGTCCGAGCCACTTTATGCTTTCAGAGAAAAACAGCTCATGCTACTACACCATAGGCAGGAATCCGAACAAGCAATAAATATATAGATTTAGTCCTTCTGTTGAACTATCCTAATCAGTGTTGGGTTCCTTATATTTTCTAGGGAATATGGAGGCCTGCAAAGCGAGTATCCATGTATACATTGTGTACATATATATTATTTATTCTCACGTGTGTGTTTCTGTGCACATGAAAGAGCATGAGGGAAGGAAGCCAAGGCTGTTAATATCTGGACTTGCTGTTAAGCACTAGGAGTTAATGAATTGTGCATGTTACTGGCATGTAGCAGTGAATGGCCACTGCAGGAGACCCATTATTAAGGCAACATGTAACTTTCTGACTTTGCAAGGTTCACTGTGGGTAAACATGCCTTAAGAACAATACATTCTCTTTTCCATGGGTTAATCTGCCAGGAACCAGAAAAATACGGCAGTGTATAAATTCAGTTCGAAGACAGAGGATGCCATGTTAGGCATGTACAGTCTGATCATCTAAATATATCTTCT
consensus depths 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 4 3 4 3 4 3 4 3 4 3 4 3 4 3 4 3 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
BLH ATG 85 143
BLH MIN 76 72
BLH OVR 85 209
ORF LNG 85 5
...PREDICTED - Sp ---- 5e-007 XP_780519.2 PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------========================================================================================================================
PROTEIN --- Ce ---- 8e-018 NP_001023876.1 F35B12.10 [Caenorhabditis elegans] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------========================================================================================================================================================================================================================================================================================================================================================================
PROTEIN --- Ci ---- 1e-026 BAE06367.1 DAN [Ciona intestinalis] --------------==================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
PROTEIN --- Dr ---- 3e-056 NP_998017.1 gremlin 1 homolog, cysteine knot superfamily [Danio rerio] ===================================================================================================================================================================================================================================================================================================================================================================================================================================================
PROTEIN === Hs ==== 2e-084 NP_037504.1 cysteine knot superfamily 1, BMP antagonist 1 [Homo sapiens] ==========================================================================================================================================================================================================================================================================================================================================================================================================================================================
PROTEIN === Mm ==== 6e-085 NP_035954.1 cysteine knot superfamily 1, BMP antagonist 1; down-regulated inv-mos-transformed cells; Gremlin1 [Mus musculus] ======================================================================================================================================================================================================================================================================================================================================================================================================
PROTEIN --- Gg ==== 6e-087 NP_990309.1 gremlin [Gallus gallus] ===============================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
PROTEIN === Xl ==== 3e-102 AAC41279.1 gremlin [Xenopus laevis] ===============================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
PROTEIN === Xt ==== 1e-105 AAI35480.1 Unknown (protein for MGC:121475) [Xenopus tropicalis] ==================================================================================================================================================================================================================================================================================================================================================================================================================================================================
PROTEIN === ?? ==== 1e-105 NP_001093701.1 gremlin 1 [Xenopus tropicalis] =====================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
Xt7.1-CCAX4917.5 TAG------ATG---------------------------TGA---------------------ATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG------------------------------------------------------------------------------------------------TAA---------------TGA---------TAA------------------------------------------------------------------------------------------------ATG---------------------------------------------------------TAA---------------------------------TAA---------------------------------ATG------------------------------------------------------------------------------ATG---------------------------------------------------------TAG------ATG---------------------------------------------------------------------------------------------------------ATG---TAA---------------------ATG---TAA------------------------------------------------------------ATG------ATG---------------TAA
ORF [ open reading frame ]
0 1 1 Tad5 FL XZT36221.FL-MGC AAGGATTTCCCCCCGTGTAGCCTCACATGGACTGTGCCCCTAGCCCTGCTCTGCTGTGAGCCAGCGGCCCTACTTACAGGATGAACTGTCTCGTTTATGCTCTAGGATCCCTTTTCCTTCTGAGTGGGCTCCTCCTCCCCAGCTCTGAAGGGAAGAAGAAGGTTAGTGGATCACAGGGAGCCATTCCTCCCCCTGACAAAGGGCAGCCCAATGACTCTGAACAAGGTCAAACACAGCCAGGAGGCCGGGGCCGAGTTAAAGGGAAGGGACAAGCACTAGCAGCTGAAGAAGTGCTCGAGTCCAGTCAAGAAGCTCTACATATCACTGAACGCAAGTATCTAAAGAGGGACTGGTGTAAGACTCAGCCCTTAAAGCAAACTATTCATGAGGATGGGTGTAACAGTCGTACCATCATCAACCGCTTTTGCTATGGGCAATGCAACTCCTTCTATATCCCCCGTCACATACGCAGGGAGGAGGGCTCCTTTCAATCCTGCTCCTTCTGCAAACCTAAAAAATTTACCACAATGGTGGTCACCCTGAACTGTCCAGAGCTTCAGCCTCCCACAAAGAAGAAGAGAATCACACGTGTCAAGCAATGTCGCTGCATCTCCATAGACCTGGACTAATGGTCCCCGGGCCTGTGAGCACTAGAATAATGGGAGCTTCGCACTTCGTATTCATACCATTTCTGTCTGTGCCAAGACCAGCAAACCGTGGCCCTCACAGACGTTCAGTTGTGTCCGAGCCACTTTATGCTTTCAGAGAAAAACAGCTCATGCTACTACACCATAGGCAGGAATCCGAACAAGCAATAAATATATAGATTTAGTCCTTCTGTTGAACTATCCTAATCAGTGTTGGGTTCCTTATATTTTCTAGGGAATATGGAGGCCTGCAAAGCGAGTATCCATGTATACATTGTGTACATATATATTATTTATTCTCACGTGTGTGTTTCTGTGCACATGAAAGAGCATGAGGGAAGGAAGCCAAGGCTGTTAATATCTGGACTTGCTGTTAAGCACTAGGAGTTAATGAATTGTGCATGTTACTGGCATGTAGCAGTGAATGGCCACTGCAGGAGACCCATTATTAAGGCAACATGTAACTTTCTGACTTTGCAAGGTTCACTGTGGGTAAACATGCCTTAAGAACAATACATTCTCTTTTCCATGGGTTAATCTGCCAGGAACCAGAAAAATACGGCAGTGTATAAATTCAGTTCGAAGACAGAGGATGCCATGTTAGGCATGTACAGTCTGATCATCTAAATATATCTTCTCAAACTGTAAAAAAAAAAAAAAAA
5 1 2 10 seed Eye 5g3 in CCAX4917.b1 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAAGGATTTCCCCCCGTGTAGCCTCACATGGACTGTGCCCCTAGCCCTGCTCTGCTGTGAGCCAGCGGCCCTACTTATAGGATGAACTGTCTCGTTTATGCTCTAGGATCCCTTTTCCTTCTGAGTGGGCTCCTCCTCCCCAGCTCTGAAGGGAAGAAGAAGGTTAGTGGATCACAGGGAGCCATTCCTCCCCCTGACAAAGGGCAGCCCAATGACTCTGAACAAGGTCAAACACAGCCAGGAGGCCGGGGCCGAGTTAAAGGGAAGGGACAAGCACTAGCAGCTGAAGAAGTGCTCGAGTCCAGTCAAGAAGCTCTACATATCACTGAACGCAAGTATCTAAAGAGGGACTGGTGTAAGACTCAGCCCTTAAAGCAAACTATTCATGAGGATGGGTGTAACAGTCGTACCATCATCAACCGCTTTTGCTATGGGCAATGCAACTCCTTCTATATCCCCCGTCACATACGCAGGGAGGAGGGCTCCTTTCAATCCTGCTCCTTCTGCAAACCTAAAAAATTTACCACAATGGTGGTCACCCTGAACTGTCCAGAGCTTCAGCCTCCCACAAAGAAGAAGAGAATCACACGTGTCAAGCAATGTCGCTGCATCTCCATAGACCTGGACTAATGGTCCCCGGGCCTGTGAGCACTAGAATAATGGGAGCTTCGCACTTCGTATTCATACCATTTCTGTCTGTGCCAAGACCAGCAAACCGTGGCCCTCACAGACGTTCAGTTGTGTCCGAGCCACTTTATGCTTTCAGAGAAAAACAG
5 1 2 bld Tad5 FL in XZT36221.5p AAGGATTTCCCCCCGTGTAGCCTCACATGGACTGTGCCCCTAGCCCTGCTCTGCTGTGAGCCAGCGGCCCTACTTACAGGATGAACTGTCTCGTTTATGCTCTAGGATCCCTTTTCCTTCTGAGTGGGCTCCTCCTCCCCAGCTCTGAAGGGAAGAAGAAGGTTAGTGGATCACAGGGAGCCATTCCTCCCCCTGACAAAGGGCAGCCCAATGACTCTGAACAAGGTCAAACACAGCCAGGAGGCCGGGGCCGAGTTAAAGGGAAGGGACAAGCACTAGCAGCTGAAGAAGTGCTCGAGTCCAGTCAAGAAGCTCTACATATCACTGAACGCAAGTATCTAAAGAGGGACTGGTGTAAGACTCAGCCCTTAAAGCAAACTATTCATGAGGATGGGTGTAACAGTCGTACCATCATCAACCGCTTTTGCTATGGGCAATGCAACTCCTTCTATATCCCCCGTCACATACGCAGGGAGGAGGGCTCCTTTCAATCCTGCTCCTTCTGCAAACCTAAAAAATTTACCACAATGGTGGTCACCCTGAACTGTCCAGAGCTTCAGCCTCCCACAAAGAAGAAGAGAATCACACGTGTCAAGCAATGTCGCTGCATCTCCATAGACCTGGACTAATGGTCCCCGGGCCTGTGAGCACTAGAATAATGGGAGCTTCGCACTTCGTATTCATACCATTTCTGTCTGTGCCAAGACCAGCAAACCGTGGCCCTCACAGACGTTCAGTTGTGTCCGAGCCACTTTATGCTTTCAG
3 1 2 bld Tad5 FL in XZT36221.3p AAAAAATTTACCACAATGGTGGTCACCCTGAACTGTCCAGAGCTTCAGCCTCCCACAAAGAAGAAGAGAATCACACGTGTCAAGCAATGTCGCTGCATCTCCATAGACCTGGACTAATGGTCCCCGGGCCTGTGAGCACTAGAATAATGGGAGCTTCGCACTTCGTATTCATACCATTTCTGTCTGTGCCAAGACCAGCAAACCGTGGCCCTCACAGACGTTCAGTTGTGTCCGAGCCACTTTATGCTTTCAGAGAAAAACAGCTCATGCTACTACACCATAGGCAGGAATCCGAACAAGCAATAAATATATAGATTTAGTCCTTCTGTTGAACTATCCTAATCAGTGTTGGGTTCCTTATATTTTCTAGGGAATATGGAGGCCTGCAAAGCGAGTATCCATGTATACATTGTGTACATATATATTATTTATTCTCACGTGTGTGTTTCTGTGCACATGAAAGAGCATGAGGGAAGGAAGCCAAGGCTGTTAATATCTGGACTTGCTGTTAAGCACTAGGAGTTAATGAATTGTGCATGTTACTGGCATGTAGCAGTGAATGGCCACTGCAGGAGACCCATTATTAAGGCAACATGTAACTTTCTGACTTTGCAAGGTTCACTGTGGGTAAACATGCCTTAAGAACAATACATTCTCTTTTCCATGGGTTAATCTGCCAGGAACCAGAAAAATACGGCAGTGTATAAATTCAGTTCGAAGACAGAGGATGCCATGTTAGGCATGTACAGTCTGATCATCTAAATATATCTTCTCAAACTTAAAAAAAAAAAAAAAAGG
3 1 2 skin Eye 5g3 in CCAX4917.g1 ATAATGGAAGCTTCGCCACTTCGTATTCATACCATTTCTGTCTGTGCCAAGACCAGCAAACCGTGGCCCTCACAGACGTTCAGTTGTGTCCGAGCCACTTTATGCTTTCAGAGAAAAAACAGCTCATGCTACTACACCATAGGCAGGAATCCGAACAAGCAATAAATATATAGATTTAGTCCTTCTGTTGAACTATCCTAATCAGTGTTGGGTTCCTTATATTTTCTAGGGAATATGGAGGCCTGCAAAGCGAGTATCCATGTATACATTGTGTACATATATATTATTTATTCTCACGTGTGTGTTTCTGTGCACATGAAAGAGCATGAGGGAAGGAAGCCAAGGCTGTTAATATCTGGACTTGCTGTTAAGCACTAGGAGTTAATGAATTGTGCATGTTACTGGCATGTAGCAGTGAATGGCCACTGCAGGAGACCCATTATTAAGGCAACATGTAACTTTCTGACTTTGCAAGGTTCACTGTGGGTAAACATGCCTTAAGAACAATACATTCTCTTTTCCATGGGTTAATCTGCCAGGAACCAGAAAAATACGGCAGTGTATAAATTCAGTTCGAAGACAGAGGATGCCATGTTAGGCATGTACAGTCTGATCATCTAAATATATCTTCTCAAACTGTA
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