Gurdon Institute Xenopus tropicalis EST Database |
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+ | Application in use by Guest User - 28 Feb 2021 - database INFO-PUBLIC | = |
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![]() | Estimated expression levels relative to total library clones. |
(detailed explanation) |
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![]() | ![]() | 0.001% | ![]() |
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![]() | Stage specific expression levels | ![]() | ![]() |
![]() | Tissue specific expression levels | ![]() | ![]() |
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![]() | stage | ![]() |
1 | 5 | 10 | 15 | 20 | 25 | 30 | 35 | 40 | 45 | 50 | 55 | 60 | ![]() | tissue | ![]() |
Bod | Bone | Brn | Eye | Fat | Hrt | Int | Kid | Liv | Lun | Mus | Ova | Ovi | Panc | Ski | Spl | Sto | Te | Thy |
Related Clusters (none)
This cluster: approximate FL confidence score = 90% 1012109261 Xt7.1-CAAL22699.5 - 2 ESTs 0.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760.......770.......780.......790.......800.......810.......820.......830.......840.......850.......860.......870.......880.......890.......900.......910.......920.......930.......940.......950.......960.......970.......980.......990.......1000......1010......1020......1030......1040......1050......1060......1070......1080......1090......1100......1110......1120......1130......1140......1150......1160......1170......1180......1190......1200..... ? ? ? ? ? ? ? ? Xt7.1-CAAL22699.5 CCCACTGAGTTACACTAGTATGAAATCTCTCTCTCTCCAACAAGATCAAATGGAGCCATTTAATGAAGAGATGCCATTGTGTCCACCATGCACCTTCCACTATCAATAATTTAAATAGCCCTCGCTGCAAGCCCCGAAGACCAAGCCTGAATATTTTTTTGGGTTTTTTTTCCCCCCCCCGTTGTTTATTGTTTGTAGCCTTTTTAATTTTTTTTTTTCCTGAGGACAGCTGGAAAGAAAACTTCACCCAAACAAACAAAACAAACCACAAAAAACTCCAACAAAATAGAATTTATACAGAGTTTCATCTGAGATCCCCAATACAAGTGTGTTGATGTGTTCTTTGACAAGTACTAACTAAAATAAGTTCCATCAGGTGAGAAGAGTGATGACCATCCTTTTCCTTACTATGGTTATTTCATACTTCAGTTGCATGAAAGCTGCCCCCATGAAAGAAGCCAGTGTCAGAGGACAAAGTGGCCTGGCCTATCCGGGTCTTCGGACCCATGGTACTCTTGAGAGCATAGGTGGTCTCGGTGTCTCAAGAGGAGGAGGACTTCCTTCACTGACAGATACTTTTGAGCATGTCATAGAAGAACTCATGGAAGAGGAACAAAGCATACGACAGAGCGAGGAAAGCAAGGACTCTGACTTGTATTCATCTAGAGTTATGCTAAGCAGTCAAGTACCTTTGGAGCCACCACTGCTTTTCCTACTTGAGGAGTACAAAAACTACTTGGATGCTGCAAACATGTCCATGAGGGTCCGGCGCCACTCGGACCCAGCCAGGCGCGGAGAGCTGAGCGTGTGTGACAGTATTAGCGAATGGGTTACAGCAGCAAACAAGAAAACTGCAGTGGACATGTCGGGGCAAACGGTTACTGTCCTCGAAAAAGTCCCCGTATCCAAAGGCCAACTGAAGCAATATTTCTACGAGACCAAATGTAACCCTATGGGTTACATGAAAGAAGGCTGCAGAGGCATAGACAAAAGGTACTGGAACTCTCAGTGCCGAACTACTCAGTCTTACGTGCGGGCTTTCACCATGGATAGCAAAAAAAAAGTTGGTTGGCGCTTTATAAGAATAGACACTTCTTGTGTATGTACACTGACCATTAAAAGGGGAAGATAGTGAATTTATCTTGTATAGATTATATTGAGAAGAAAATATCTATTTGTATATATACATAACAGGGTAAA Xt7.1-CHK-1008254169 GAGTTACACTAGTATGAAATCTCTCTCTCTCCAACAAGATCAAATGGAGCCATTTAATGAAGAGATGCCATTGTGTCCACCATGCACCTTCCACTATCAATAATTTAAATAGCCCTCGCTGCAAGCCCCGAAGACCAAGCCTGAATATTTTTTTGGGTTTTTTTTCCCCCCCCCGTTGTTTATTGTTTGTAGCCTTTTTAATTTTTTTTTTTCCTGAGGACAGCTGGAAAGAAAACTTCACCCAAACAAACAAAACAAACCACAAAAAACTCCAACAAAATAGAATTTATACAGAGTTTCATCTGAGATCCCCAATACAAGTGTGTTGATGTGTTCTTTGACAAGTACTAACTAAAATAAGTTCCATCAGGTGAGAAGAGTGATGACCATCCTTTTCCTTACTATGGTTATTTCATACTTCAGTTGCATGAAAGCTGCCCCCATGAAAGAAGCCAGTGTCAGAGGACAAAGTGGCCTGGCCTATCCGGGTCTTCGGACCCATGGTACTCTTGAGAGCATAGGTGGTCTCGGTGTCTCAAGAGGAGGAGGACTTCCTTCACTGACAGATACTTTTGAGCATGTCATAGAAGAACTCATGGAAGAGGAACAAAGCATACGACAGAGCGAGGAAAGCAAGGACTCTGACTTGTATTCATCTAGAGTTATGCTAAGCAGTCAAGTACCTTTGGAGCCACCACTGCTTTTCCTACTTGAGGAGTACAAAAACTACTTGGATGCTGCAAACATGTCCATGAGGGTCCGGCGCCACTCGGACCCAGCCAGGCGCGGAGAGCTGAGCGTGTGTGACAGTATTAGCGAATGGGTTACAGCAGCAAACAAGAAAACTGCAGTGGACATGTCGGGGCAAACGGTTACTGTCCTCGAAAAAGTCCCCGTATCCAAAGGCCAACTGAAGCAATATTTCTACGAGACCAAATGTAACCCTATGGGTTACATGAAAGAAGGCTGCAGAGGCATAGACAAAAGGTACTGGAACTCTCAGTGCCGAACTACTCAGTCTTACGTGCGGGCTTTCACCATGGATAGCAAAAAAAAAGTTGGTTGGCGCTTTATAAGAATAGACACTTCTTGTGTATGTACACTGACCATTAAAAGGGGAAGATAGTGAATTTATCTTGTATAGATTATATTGAGAAGAAAATATCTATTTGTATATATACATAACAGGGTAAATTATTC consensus depths 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 BLH ATG 388 137 BLH MIN 367 98 BLH MPR 19 98 BLH OVR 388 194 ORF LNG 388 9 PROTEIN --- Bf ---- 4e-012 ABB51092.1 neurotrophin [Branchiostoma floridae] -------------=========================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================== PROTEIN --- Sp ---- 5e-014 NP_001073024.1 neurotrophin 5 [Strongylocentrotus purpuratus] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------===================================================================================================================================================================================================================================================================================================================================================================================================================================================================== PROTEIN === Dr ==== 2e-103 NP_571670.2 brain-derived neurotrophic factor [Danio rerio] ========================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================== PROTEIN === Gg ==== 2e-121 NP_001026787.1 brain-derived neurotrophic factor [Gallus gallus] ===================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================== PROTEIN === Mm ==== 1e-124 NP_031566.4 brain derived neurotrophic factor isoform 1 [Mus musculus] ======================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================= PROTEIN === Hs ==== 3e-126 NP_733927.1 brain-derived neurotrophic factor isoform b preproprotein [Homo sapiens] ========================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================= PROTEIN === Xl ==== 3e-137 ABK41483.1 brain derived neurotrophic factor [Xenopus laevis] ======================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================== PROTEIN === Xt ==== 3e-141 ABN58533.1 brain-derived neurotrophic factor [Xenopus tropicalis] ==================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================== PROTEIN === ?? ==== 3e-141 NP_001090767.1 brain-derived neurotrophic factor [Xenopus (Silurana) tropicalis] ===================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================== Xt7.1-CAAL22699.5 ATG---------------------------ATG------------------ATG---------------------------------TAA------TAG------------------------------------------------------------------------------------------------------TGA---------------------------------------------------------------TAG---------------------------------------------ATG---------------------TAA---------------------------ATG------------------ATG---------------------ATG------------ATG------------------------------------------------------------------------------------------------------------------------------------------------------ATG------------------------------------------------------------------ATG------------------------------------------------------------------------------ATG---ATG------------------------------------------------------------------------------------------------------ATG---------------------------------------------------------------------------------------ATG------ATG---------------------------------------------------------------------------------ATG---------------------------------------------------------------------------------TAGTGA------------TAG ORF ... open reading frame ... 5 1 2 bld Brn4 PIPE in CAAL22699.5p CCCACTGAGTTACACTAGTATGAAATCTCTCTCTCTCCAACAAGATCAAATGGAGCCATTTAATGAAGAGATGCCATTGTGTCCACCATGCACCTTCCACTATCAATAATTTAAATAGCCCTCGCTGCAAGCCCCGAAGACCAAGCCTGAATATTTTTTTGGGTTTTTTTTCCCCCCCCCGTTGTTTATTGTTTGTAGCCTTTTTAATTTTTTTTTTTCCTGAGGACAGCTGGAAAGAAAACTTCACCCAAACAAACAAAACAAACCACAAAAAACTCCAACAAAATAGAATTTATACAGAGTTTCATCTGAGATCCCCAATACAAGTGTGTTGATGTGTTCTTTGACAAGTACTAACTAAAATAAGTTCCATCAGGTGAGAAGAGTGATGACCATCCTTTTCCTTACTATGGTTATTTCATACTTCAGTTGCATGAAAGCTGCCCCCATGAAAGAAGCCAGTGTCAGAGGACAAAGTGGCCTGGCCTATCCGGGTCTTCGGACCCATGGTACTCTTGAGAGCATAGGTGGTCTCGGTGTCTCAAGAGGAGGAGGACTTCCTTCACTGACAGATACTTTTGAGCATGTCATAGAAGAACTCATGGAAGAGGAACAAAGCATACGACAGAGCGAGGAAAGCAAGGACTCTGACTTGTATTCATCTAGAGTTATGCTAAGCAGTCAAGTACCTTTGGAGCCACCACTGCTTTTCCTACTTGAGGAGTACAAAAACTACTTGGATGCTGCAAACATGTCCATGAGGGTCCGGCGCCACTCGGACCCAGCCAGGCGCGGAGAGCTGACCGTGTGTGACAGTATTAGCGAATGGGGTACAGCAG 3 1 2 seed Brn4 PIPE in CAAL22699.3p AAATAAGTTCCCATCAGGTGAGAAGAGTGATGACCATCCTTTTCCTTACTATGGTTATTTCATACTTCAGTTGCATGAAAGCTGCCCCCATGAAAGAAGCCAGTGTCAGAGGACAAAGTGGCCTGGCCTATCCGGGTCTTCGGACCCATGGTACTCTTGAGAGCATAGGTGGTCTCGGTGTCTCAAGAGGAGGAGGACTTCCTTCACTGACAGATACTTTTGAGCATGTCATAGAAGAACTCATGGAAGAGGAACAAAGCATACGACAGAGCGAGGAAAGCAAGGACTCTGACTTGTATTCATCTAGAGTTATGCTAAGCAGTCAAGTACCTTTGGAGCCACCACTGCTTTTCCTACTTGAGGAGTACAAAAACTACTTGGATGCTGCAAACATGTCCATGAGGGTCCGGCGCCACTCGGACCCAGCCAGGCGCGGAGAGCTGAGCGTGTGTGACAGTATTAGCGAATGGGTTACAGCAGCAAACAAGAAAACTGCAGTGGACATGTCGGGGCAAACGGTTACTGTCCTCGAAAAAGTCCCCGTATCCAAAGGCCAACTGAAGCAATATTTCTACGAGACCAAATGTAACCCTATGGGTTACATGAAAGAAGGCTGCAGAGGCATAGACAAAAGGTACTGGAACTCTCAGTGCCGAACTACTCAGTCTTACGTGCGGGCTTTCACCATGGATAGCAAAAAAAAAGTTGGTTGGCGCTTTATAAGAATAGACACTTCTTGTGTATGTACACTGACCATTAAAAGGGGAAGATAGTGAATTTATCTTGTATAGATTATATTGAGAAGAAAATATCTATTTGTATATATACATAACAGGGTAAATTATTCCGT
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