Gurdon Institute Xenopus tropicalis EST Database

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Estimated expression levels relative to total library clones.
(detailed explanation)

0.001% 0.001%
Stage specific expression levels Tissue specific expression levels
stage 1 5 10 15 20 25 30 35 40 45 50 55 60tissue Bod Bone Brn Eye Fat Hrt Int Kid Liv Lun Mus Ova Ovi Panc Ski Spl Sto Te Thy

 Related Clusters

         CS%  VC Transcript                               Size Type    Links    % In    % Out     Identified Blast Description.
     1   1.0    0Xt7.1-CAAN10486.3                          10 END     1          33       10                (no blast hit)

 This cluster: approximate FL confidence score = 0%

 1012096185 Xt7.1-CBXT5004.3 - 3 ESTs
                                                                       0.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760.......770.......780.......790.......800.......810.......820.......830.......840.......850.......860.......870.......880.......890.......900.......910.......920.......930.......940.......950.......960.......970.......980.......990.......1000......1010......1020......1030......1040......1050......1060......1070......1080......1090......1100......1110......1120......1130......1140......1150......1160......1170......1180......1190......1200......1210....
 ?   ?   ?    ?    ?     ?    ?   ? 
                                                      Xt7.1-CBXT5004.3 GCAGACTGATAATACTAAACAGCTTCTTTAGTTACTATTAGTGTGCTAACTTATTAATGAAAATGACATATTTATTTTGATATTATGGTAGTAGAGTTATGAAAAGCAGCTTTTATTTTTATAAGAATATTACTCTCATTTGACACAGATGAAATTGCCTTTTTTTAATTTACTGAATAGTATTTGTATTCTGCAAATAACAGAGGTTTAAGAAACGAAAGAAGCTATTTGAAGTAAACTTAATTTCATTAAGTAATGTTTATGTACTAAGCATCCATTCAGTAAAAGGTTACAAAGGCTGCTTTTGATGTATAACTCACTGTATCACTTTTTATGTTCTGCTTCGAGCGATTGCCACTTTTGTCTTGTTTTGATATGGTTATTCTGAAAAAGAATAATATAGGGAATGTGCAATGATACTGCAGTTGCAGGGTGTGCAATGGGTGCTGCTCTGCAATTCCAGGAGGTTCTTGGCCAGGAAGTGGAGGTTGGTTCAACAATGCAAGTAGGGTAGTTGCTTACAATTGAAAGTGTTTCACTGATCAGCAAGGGTCATTGTTTGCTTTTCTGCTCTTCCTTACGGAATTATATATATATACACCCTCCATGTCTAAGCTTTAATGTAATGTGAATTTATGTAGCAATTAGAGCACAAGAGGGTTTTTTCTCTCAGACCCAGCACGGCCAACCTACATCTCTCCAATAGTACAGCAACAAATGGCTGTAGGGGATGGTAAGAGTTCACCAGGTTACAATTCTATAGACAAAGCTTCCTTGTGCCAAGAGATGAAATGTTATGTGCATTGTTTTGTCACTGATATGTTATCTGTATATATTTTATATTTTTTTTGCAGGAATGTAGGATCACCAATCAAAATGCCATTATTTATTGTTCAAATAGAGCATTCTGCACTTTATATGTCTCACTATTGCTATTTAACACATCAAAGAGAAAATGAACTTTTATGATAGAAGAGAGAAATTCCACTGTACTGTCAACTCAGTTTGTTGCTGAACAAAAAATGATGATTTTATTAAGGATGCACCGAATCCACGGTCCTGGCCAAACCAAATCCGAATCCTAAAAATCACATGACTTTTTGTCATGGTAACACGGAAGTGGAAGTGCGCAGCTTCATTTAGCCCTTCCAAGTCCTAATTAGTATATGCTAATTCGGATTCGGTTCCGTATTCGGCTGAATCCCTTGCGGT
                                                  Xt7.1-CHK-1008249774       TGATAATACTAAACAGCTTCTTTAGTTACTATTAGTGTGCTAACTTATTAATGAAAATGACATATTTATTTTGATATTATGGTAGTAGAGTTATGAAAAGCAGCTTTTATTTTTATAAGAATATTACTCTCATTTGACACAGATGAAATTGCCTTTTTTTAATTTACTGAATAGTATTTGTATTCTGCAAATAACAGAGGTTTAAGAAACGAAAGAAGCTATTTGAAGTAAACTTAATTTCATTAAGTAATGTTTATGTACTAAGCATCCATTCAGTAAAAGGTTACAAAGGCTGCTTTTGATGTATAACTCACTGTATCACTTTTTATGTTCTGCTTCGAGCGATTGCCACTTTTGTCTTGTTTTGATATGGTTATTCTGAAAAAGAATAATATAGGGAATGTGCAATGATACTGCAGTTGCAGGGTGTGCAATGGGTGCTGCTCTGCAATTCCAGGAGGTTCTTGGCCAGGAAGTGGAGGTTGGTTCAACAATGCAAGTAGGGTAGTTGCTTACAATTGAAAGTGTTTCACTGATCAGCAAGGGTCATTGTTTGCTTTTCTGCTCTTCCTTACGGAATTATATATATATACACCCTCCATGTCTAAGCTTTAATGTAATGTGAATTTATGTAGCAATTAGAGCACAAGAGGGTTTTTTCTCTCAGACCCAGCACGGCCAACCTACATCTCTCCAATAGTACAGCAACAAATGGCTGTAGGGGATGGTAAGAGTTCACCAGGTTACAATTCTATAGACAAAGCTTCCTTGTGCCAAGAGATGAAATGTTATGTGCATTGTTTTGTCACTGATATGTTATCTGTATATATTTTATATTTTTTTTGCAGGAATGTAGGATCACCAATCAAAATGCCATTATTTATTGTTCAAATAGAGCATTCTGCACTTTATATGTCTCACTATTGCTATTTAACACATCAAAGAGAAAATGAACTTTTATGATAGAAGAGAGAAATTCCACTGTACTGTCAACTCAGTTTGTTGCTGAACAAAAAATGATGATTTTATTAAGGATGCACCGAATCCACGGTCCTGGCCAAACCAAATCCGAATCCTAAAAATCACATGACTTTTTGTCATGGTAACACGGAAGTGGAAGTGCGCAGCTTCATTTAGCCCTTCCAAGTCCTAATTAGTATATGCTAATTCGGATTCGGTTCCGTATTCGGCTGAATCCCTTGCGGTGGATTC
                                                      consensus depths      1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     3     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     2     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1     1
                                                      Xt7.1-CBXT5004.3       TGATAA---TAA------------------------------------TAATGA---TGA------------------ATG------------TGA---------------------------------------------------------------TAA---------TAG------------------------------------------------------TAA---TAA------TAA---ATG---ATG---TAA------------TAA---------------------------TAA------------------ATG---------------------------------------ATG------------------------------------TGA------------------------------------------------------------------------------------------------------------TGA------------------------------------------------------------------------------ATG---------TAA------------------------TAG---------------------------------------------------------------------ATG------------------------------------------------------------------ATG------------------------------ATG------------------------------------------------------ATG---------------------------------------ATG---------------------------------------------TGATAG---------------------------------------------------TGATGA------TAA------------------------------------------------------ATG---------------------------------------------TAG---------------------------TAA------------------------TGA
                                                                   ORF                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              [ open reading frame                                                                                                                                                                                                                                  ...
  5   1   2       bld Tbd1      in                         CBXT5004.b1 GCAGACTGATAATACTAAACAGCTTCTTTAGTTACTATTAGTGTGCTAACTTATTAATGAAAATGACATATTTATTTTGATATTATGGTAGTAGAGTTATGAAAAGCAGCTTTTATTTTTATAAGAATATTACTCTCATTTGACACAGATGAAATTGCCTTTTTTTAATTTACTGAATAGTATTTGTATTCTGCAAATAACAGAGGTTTAAGAAACGAAAGAAGCTATTTGAAGTAAACTTAATTTCATTAAGTAATGTTTATGTACTAAGCATCCATTCAGTAAAAGGTTACAAAGGCTGCTTTTGATGTATAACTCACTGTATCACTTTTTATGTTCTGCTTCGAGCGATTGCCACTTTTGTCTTGTTTTGATATGGTTATTCTGAAAAAGAATAATATAGGGAATGTGCAATGATACTGCAGTTGCAGGGTGTGCAATGGGTGCTGCTCTGCAATTCCAGGAGGTTCTTGGCCAGGAAGTGGAGGTTGGTTCAACAATGCAAGTAGGGTAGTTGCTTACAATTGAAAGTGTTTCACTGATCAGCAAGGGTCATTGTTTGCTTTTCTGCTCTTCCTTACGGAATTATATATATATACACCCTCCATGTCTAAGCTTTAATGTAATGTGAATTTATGTAGCAATTAGAGCACAAGAGGGTTTTTTCTCTCAGACCCAGCACGGCCAACCTACATCTCTCCCATAGTACAGCAACAAATGGCTGTAGGGGATGGTAAGAGTTCACC
  3   1   2      seed Tbd1      in                         CBXT5004.g1                                                                                                                                                                              TGAATAGTATTTGTATTCTGCAAATAACAGAGGTTTAAGAAACGAAAGAAGCTATTTGAAGTAAACTTAATTTCATTAAGTAATGTTTATGTACTAAGCATCCATTCAGTAAAAGGTTACAAAGGCTGCTTTTGATGTATAACTCACTGTATCACTTTTTATGTTCTGCTTCGAGCGATTGCCACTTTTGTCTTGTTTTGATATGGTTATTCTGAAAAAGAATAATATAGGGAATGTGCAATGATACTGCAGTTGCAGGGTGTGCAATGGGTGCTGCTCTGCAATTCCAGGAGGTTCTTGGCCAGGAAGTGGAGGTTGGTTCAACAATGCAAGTAGGGTAGTTGCTTACAATTGAAAGTGTTTCACTGATCAGCAAGGGTCATTGTTTGCTTTTCTGCTCTTCCTTACGGAATTATATATATATACACCCTCCATGTCTAAGCTTTAATGTAATGTGAATTTATGTAGCAATTAGAGCACAAGAGGGTTTTTTCTCTCAGACCCAGCACGGCCAACCTACATCTCTCCAATAGTACAGCAACAAATGGCTGTAGGGGATGGTAAGAGTTCACCAGGTTACAATTCTATAGACAAAGCTTCCTTGTGCCAAGAGATGAAATGTTATGTGCATTGTTTTGTCACTGATATGTTATCTGTATATATTTTATATTTTTTTTGCAGGAATGTAGGATCACCAATCAAAATGCCATTATTTATTGTTCAAATAGAGCATTCTGCACTTTAAAAAAAAAAAAAAA
  5   1   2       bld Brn2      out                       CAAJ15642.5p                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AATTCCAGGAGGTTCTTGGCCAGGAAGTGGAGGTTGGTTCAACAATGCAAGTAGGGTAGTTGCTTACAATTGAAAGTGTTTCACTGATCAGCAAGGGTCATTGTTTGCTTTTCTGCTCTTCCTTACGGAATTATATATATATACACCCTCCATGTCTAAGCTTTAATGTAATGTGAATTTATGTAGCAATTAGAGCACAAGAGGGTTTTTTCTCTCAGACCCAGCACGGCCAACCTACATCTCTCCAATAGTACAGCAACAAATGGCTGTAGGGGATGGTAAGAGTTCACCAGGTTACAATTCTATAGACAAAGCTTCCTTGTGCCAAGAGATGAAATGTTATGTGCATTGTTTTGTCACTGATATGTTATCTGTATATATTTTATATTTTTTTTGCAGGAATGTAGGATCACCAATCAAAATGCCATTATTTATTGTTCAAATAGAGCATTCTGCACTTTATATGTCTCACTATTGCTATTTAACACATCAAAGAGAAAATGAACTTTTATGATAGAAGAGAGAAATTCCACTGTACTGTCAACTCAGTTTGTTGCTGAACAAAAAATGATGATTTTATTAAGGATGCACCGAATCCACGGTCCTGGCCAAACCAAATCCGAATCCTAAAAATCACATGACTTTTTGTCATGGTAACACGGAAGTGGAAGTGCGCAGCTTCATTTAGCCCTTCCAAGTCCTAATTAGTATATGCTAATTCGGATTCGGTTCCGTATTCGGCTGAATCCCTTGCGGTGGATTC

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